Genome sc|0001475


Database

NCBI Assembly

Accession

GCA_032595685.1

Genomics

Accession
NCBI Assembly:GCA_032595685.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 91.49%
  • Contamination: 2.05%
  • Quality: 81.24
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
55.0 ×
Source
Other features
  • G+C Content: 48.03%
  • Coding Density: 86.43%
  • Codon Table: 11
  • N50: 776,319 bp
  • Contigs: 9
  • Largest Contig: 1,057,715 bp
  • Assembly Length: 4,900,016 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Hybrid assembly of Illumina and Nanopore reads, quality assessment with CheckM2
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2022
Location
Lat Lon: 51.439 N 4.167 E
Toponym
Geo Loc Name: Netherlands: Rattekaai salt marsh
Environment
Sample Type: metagenomic assembly
Isolation Source: enrichment culture inoculated with sediment from salt marsh
Env Broad Scale: ENVO:03000034
Env Local Scale: ENVO:00000045
Env Medium: ENVO:00005795
Other
Depth: 0-15 cm
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
All retrieved samples

Metadata retrieved 3 months ago


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