JSON

Genome sc|0001474

Name

Electrothrix communisTs

Database

NCBI Assembly

Accession

GCA_030644725.1

Genomics

Accession
NCBI Assembly:GCA_030644725.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 95.88%
  • Contamination: 1.14%
  • Quality: 90.18
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
166.0 ×
Source
Other features
  • G+C Content: 48.36%
  • Coding Density: 86.33%
  • Codon Table: 11
  • N50: 4,845,585 bp
  • Contigs: 1
  • Largest Contig: 4,845,585 bp
  • Assembly Length: 4,845,585 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
This is a circular genome after hybrid assembly of Illumina and Nanopore reads; still completeness (by CheckM2) was only estimated to 95.88%.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020
Location
Lat Lon: 56.1385 N 10.2157 E
Toponym
Geo Loc Name: Denmark: Marselisborg harbour
Environment
Sample Type: metagenomic assembly
Isolation Source: marine sediment
Env Broad Scale: ENVO:03000034
Env Local Scale: ENVO:00000464
Env Medium: ENVO:00005795
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0
Biosamplemodel: MIMAG
All retrieved samples
Metadata retrieved 4 months ago


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