Genome sc|0001458


Database

NCBI Assembly

Accession

GCA_009933135.1

Genomics

Accession
NCBI Assembly:GCA_009933135.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 3.8%
  • Quality: 81.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
Other features
  • G+C Content: 43.77%
  • Coding Density: 83.64%
  • Codon Table: 11
  • N50: 215,275 bp
  • Contigs: 22
  • Largest Contig: 699,534 bp
  • Assembly Length: 3,181,050 bp
  • Ambiguous Assembly Fraction: 0.013%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015-05
Location
Not detected
Toponym
Geo Loc Name: USA: South Carolina
Environment
Sample Type: Whole organism
Other
Host: Gallus gallus domesticus
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples

Metadata retrieved 3 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license