JSON

Genome sc|0000102

Name

Salinibacter pampae

Database

NCBI Assembly

Accession

GCA_947077715.1

Genomics

Accession
NCBI Assembly:GCA_947077715.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.0%
  • Contamination: 2.9%
  • Quality: 83.5
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
56.0 ×
Source
Other features
  • G+C Content: 65.53%
  • Coding Density: 85.43%
  • Codon Table: 11
  • N50: 20,253 bp
  • Contigs: 225
  • Largest Contig: 60,535 bp
  • Assembly Length: 3,090,338 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Script HMM.essential.rb from the Enveomics scripts collection using default paramentes was used for assess the completness and contamination of the MAG.
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license