AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
    • AAI clade 9-1 medoid: GCF 003347605 1
    • AAI clade 9-2 medoid: GCA 003247185 1
    • AAI clade 9-3 medoid: GCA 007134085 1
    • AAI clade 9-4 medoid: GCF 002933815 1
    • AAI clade 9-5 medoid: GCF 014352875 1
      • AAI clade 9-5-1 medoid: GCF 900239185 1
      • AAI clade 9-5-2 medoid: GCA 015665265 1
      • AAI clade 9-5-3 medoid: GCF 002831685 1
      • AAI clade 9-5-4 medoid: GCA 010906935 1
      • AAI clade 9-5-5 medoid: GCF 015767435 1
      • AAI clade 9-5-6 medoid: GCA 001874265 1
      • AAI clade 9-5-7 medoid: GCA 006065315 1
      • AAI clade 9-5-8 medoid: GCA 002390165 1
      • AAI clade 9-5-9 medoid: GCA 002400885 1
      • AAI clade 9-5-10 medoid: GCF 009832745 1
      • AAI clade 9-5-11 medoid: GCF 006381105 1
      • AAI clade 9-5-12 medoid: GCA 013139515 1
      • AAI clade 9-5-13 medoid: GCA 002747735 1
      • AAI clade 9-5-14 medoid: GCA 002793215 1
      • AAI clade 9-5-15 medoid: GCA 003973375 1
      • AAI clade 9-5-16 medoid: GCF 003664185 1
        • AAI clade 9-5-16-1 medoid: GCA 004762155 1
        • AAI clade 9-5-16-2 medoid: GCA 018456245 1
        • AAI clade 9-5-16-3 medoid: GCF 001889045 1
        • AAI clade 9-5-16-4 medoid: GCF 002120225 1
        • AAI clade 9-5-16-5 medoid: GCF 002954385 1
        • AAI clade 9-5-16-6 medoid: GCF 003664185 1
          5 datasets: GCF 003387615 1 (AAI: 88.09%), GCF 003610735 1 (AAI: 84.33%), GCF 003664185 1 (AAI: 100.0%), GCF 003867015 1 (AAI: 93.48%), and GCF 004363005 1 (AAI: 82.47%)
        • AAI clade 9-5-16-7 medoid: GCF 008124875 1
        • AAI clade 9-5-16-8 medoid: GCF 014062345 1
        • AAI clade 9-5-16-9 medoid: GCF 900105455 1
        • AAI clade 9-5-16-10 medoid: GCF 900105985 1
        • AAI clade 9-5-16-11 medoid: GCF 900119795 1
      • AAI clade 9-5-17 medoid: GCA 011391075 1
      • AAI clade 9-5-18 medoid: GCA 013205245 1
      • AAI clade 9-5-19 medoid: GCA 013214275 1
      • AAI clade 9-5-20 medoid: GCA 013215105 1
      • AAI clade 9-5-21 medoid: GCA 013373385 1
      • AAI clade 9-5-22 medoid: GCA 014075215 1
      • AAI clade 9-5-23 medoid: GCA 015488935 1
      • AAI clade 9-5-24 medoid: GCA 015662775 1
      • AAI clade 9-5-25 medoid: GCF 003384935 1
      • AAI clade 9-5-26 medoid: GCA 016342705 1
      • AAI clade 9-5-27 medoid: GCA 016744615 1
      • AAI clade 9-5-28 medoid: GCA 016763215 1
      • AAI clade 9-5-29 medoid: GCA 018335575 1
      • AAI clade 9-5-30 medoid: GCF 001640115 1
      • AAI clade 9-5-31 medoid: GCF 014784055 1
      • AAI clade 9-5-32 medoid: GCA 905479625 1
      • AAI clade 9-5-33 medoid: GCA 905479835 1
      • AAI clade 9-5-34 medoid: GCF 000152945 2
      • AAI clade 9-5-35 medoid: GCF 001697185 1
      • AAI clade 9-5-36 medoid: GCF 000430545 1
      • AAI clade 9-5-37 medoid: GCF 001761365 1
      • AAI clade 9-5-38 medoid: GCF 002813915 1
      • AAI clade 9-5-39 medoid: GCF 001975665 1
      • AAI clade 9-5-40 medoid: GCF 002954665 1
      • AAI clade 9-5-41 medoid: GCF 015767245 1
    • AAI clade 9-6 medoid: GCF 009754945 1
    • AAI clade 9-7 medoid: GCF 002886045 1
    • AAI clade 9-8 medoid: GCA 017983975 1
    • AAI clade 9-9 medoid: GCA 002715485 1
    • AAI clade 9-10 medoid: GCA 002699205 1
    • AAI clade 9-11 medoid: GCF 003014695 1
    • AAI clade 9-12 medoid: GCA 902594485 1
    • AAI clade 9-13 medoid: GCA 016777965 1
    • AAI clade 9-14 medoid: GCF 007655305 1
    • AAI clade 9-15 medoid: GCA 903887845 1
    • AAI clade 9-16 medoid: GCA 016222975 1
    • AAI clade 9-17 medoid: GCA 016786885 1
    • AAI clade 9-18 medoid: GCA 017303795 1
    • AAI clade 9-19 medoid: GCF 015351595 1
    • AAI clade 9-20 medoid: GCA 002389765 1
    • AAI clade 9-21 medoid: GCA 013214355 1
    • AAI clade 9-22 medoid: GCF 011089895 1
    • AAI clade 9-23 medoid: GCA 013391385 1
    • AAI clade 9-24 medoid: GCF 018613605 1
    • AAI clade 9-25 medoid: GCA 016708845 1
    • AAI clade 9-26 medoid: GCF 900156415 1
    • AAI clade 9-27 medoid: GCF 004349195 1
    • AAI clade 9-28 medoid: GCF 012516355 1
    • AAI clade 9-29 medoid: GCF 000520975 1
    • AAI clade 9-30 medoid: GCA 016712535 1
    • AAI clade 9-31 medoid: GCF 003944715 1
    • AAI clade 9-32 medoid: GCF 014251635 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1