AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
    • AAI clade 9-1 medoid: GCF 003347605 1
    • AAI clade 9-2 medoid: GCA 003247185 1
    • AAI clade 9-3 medoid: GCA 007134085 1
    • AAI clade 9-4 medoid: GCF 002933815 1
    • AAI clade 9-5 medoid: GCF 014352875 1
    • AAI clade 9-6 medoid: GCF 009754945 1
    • AAI clade 9-7 medoid: GCF 002886045 1
    • AAI clade 9-8 medoid: GCA 017983975 1
    • AAI clade 9-9 medoid: GCA 002715485 1
    • AAI clade 9-10 medoid: GCA 002699205 1
    • AAI clade 9-11 medoid: GCF 003014695 1
    • AAI clade 9-12 medoid: GCA 902594485 1
    • AAI clade 9-13 medoid: GCA 016777965 1
    • AAI clade 9-14 medoid: GCF 007655305 1
    • AAI clade 9-15 medoid: GCA 903887845 1
    • AAI clade 9-16 medoid: GCA 016222975 1
    • AAI clade 9-17 medoid: GCA 016786885 1
    • AAI clade 9-18 medoid: GCA 017303795 1
    • AAI clade 9-19 medoid: GCF 015351595 1
    • AAI clade 9-20 medoid: GCA 002389765 1
    • AAI clade 9-21 medoid: GCA 013214355 1
    • AAI clade 9-22 medoid: GCF 011089895 1
    • AAI clade 9-23 medoid: GCA 013391385 1
    • AAI clade 9-24 medoid: GCF 018613605 1
    • AAI clade 9-25 medoid: GCA 016708845 1
    • AAI clade 9-26 medoid: GCF 900156415 1
    • AAI clade 9-27 medoid: GCF 004349195 1
    • AAI clade 9-28 medoid: GCF 012516355 1
      • AAI clade 9-28-1 medoid: GCF 012516355 1
        • AAI clade 9-28-1-1 medoid: GCF 900142605 1
        • AAI clade 9-28-1-2 medoid: GCA 003448375 1
        • AAI clade 9-28-1-3 medoid: GCA 004299085 1
        • AAI clade 9-28-1-4 medoid: GCA 004322015 1
        • AAI clade 9-28-1-5 medoid: GCA 013153515 1
        • AAI clade 9-28-1-6 medoid: GCA 013695715 1
        • AAI clade 9-28-1-7 medoid: GCA 013816805 1
        • AAI clade 9-28-1-8 medoid: GCA 014190515 1
        • AAI clade 9-28-1-9 medoid: GCA 014190535 1
        • AAI clade 9-28-1-10 medoid: GCA 014190575 1
        • AAI clade 9-28-1-11 medoid: GCA 014380545 1
        • AAI clade 9-28-1-12 medoid: GCA 015490475 1
        • AAI clade 9-28-1-13 medoid: GCA 016700115 1
        • AAI clade 9-28-1-14 medoid: GCA 016706405 1
        • AAI clade 9-28-1-15 medoid: GCA 016715425 1
        • AAI clade 9-28-1-16 medoid: GCA 016719635 1
        • AAI clade 9-28-1-17 medoid: GCA 016786765 1
        • AAI clade 9-28-1-18 medoid: GCA 017745275 1
        • AAI clade 9-28-1-19 medoid: GCA 017849435 1
        • AAI clade 9-28-1-20 medoid: GCA 019236475 1
        • AAI clade 9-28-1-21 medoid: GCA 903857255 1
        • AAI clade 9-28-1-22 medoid: GCA 903919075 1
        • AAI clade 9-28-1-23 medoid: GCF 002557795 1
        • AAI clade 9-28-1-24 medoid: GCF 003014755 1
        • AAI clade 9-28-1-25 medoid: GCF 902167325 1
        • AAI clade 9-28-1-26 medoid: GCF 003259335 1
        • AAI clade 9-28-1-27 medoid: GCF 003308995 1
        • AAI clade 9-28-1-28 medoid: GCF 003419895 1
        • AAI clade 9-28-1-29 medoid: GCF 003568665 1
        • AAI clade 9-28-1-30 medoid: GCF 003958645 1
        • AAI clade 9-28-1-31 medoid: GCF 003994345 2
        • AAI clade 9-28-1-32 medoid: GCF 012641265 1
        • AAI clade 9-28-1-33 medoid: GCF 007992715 1
        • AAI clade 9-28-1-34 medoid: GCF 009647655 1
        • AAI clade 9-28-1-35 medoid: GCF 011752935 1
        • AAI clade 9-28-1-36 medoid: GCF 012641275 1
          6 datasets: GCF 012516355 1 (AAI: 92.66%), GCF 012641275 1 (AAI: 100.0%), GCF 012927205 1 (AAI: 95.19%), GCF 014529935 1 (AAI: 86.43%), GCF 014529945 1 (AAI: 95.45%), and GCF 900167135 1 (AAI: 92.39%)
        • AAI clade 9-28-1-37 medoid: GCF 900168065 1
        • AAI clade 9-28-1-38 medoid: GCF 900107795 1
        • AAI clade 9-28-1-39 medoid: GCF 902167635 1
      • AAI clade 9-28-2 medoid: GCF 003182155 1
    • AAI clade 9-29 medoid: GCF 000520975 1
    • AAI clade 9-30 medoid: GCA 016712535 1
    • AAI clade 9-31 medoid: GCF 003944715 1
    • AAI clade 9-32 medoid: GCF 014251635 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1