AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 9-2
medoid: GCA 003247185 1
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AAI clade 9-3
medoid: GCA 007134085 1
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AAI clade 9-4
medoid: GCF 002933815 1
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AAI clade 9-5
medoid: GCF 014352875 1
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AAI clade 9-6
medoid: GCF 009754945 1
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AAI clade 9-7
medoid: GCF 002886045 1
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AAI clade 9-8
medoid: GCA 017983975 1
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AAI clade 9-9
medoid: GCA 002715485 1
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AAI clade 9-10
medoid: GCA 002699205 1
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AAI clade 9-11
medoid: GCF 003014695 1
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AAI clade 9-12
medoid: GCA 902594485 1
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AAI clade 9-13
medoid: GCA 016777965 1
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AAI clade 9-14
medoid: GCF 007655305 1
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AAI clade 9-15
medoid: GCA 903887845 1
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AAI clade 9-16
medoid: GCA 016222975 1
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AAI clade 9-17
medoid: GCA 016786885 1
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AAI clade 9-18
medoid: GCA 017303795 1
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AAI clade 9-19
medoid: GCF 015351595 1
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AAI clade 9-20
medoid: GCA 002389765 1
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AAI clade 9-21
medoid: GCA 013214355 1
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AAI clade 9-22
medoid: GCF 011089895 1
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AAI clade 9-23
medoid: GCA 013391385 1
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AAI clade 9-24
medoid: GCF 018613605 1
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AAI clade 9-25
medoid: GCA 016708845 1
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AAI clade 9-26
medoid: GCF 900156415 1
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AAI clade 9-27
medoid: GCF 004349195 1
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AAI clade 9-27-1
medoid: GCA 001800905 1
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AAI clade 9-27-2
medoid: GCA 002256285 1
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AAI clade 9-27-3
medoid: GCA 002280815 1
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AAI clade 9-27-4
medoid: GCF 015277675 1
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AAI clade 9-27-5
medoid: GCA 002454195 1
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AAI clade 9-27-6
medoid: GCA 003525665 1
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AAI clade 9-27-7
medoid: GCA 004211145 1
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AAI clade 9-27-8
medoid: GCA 004295795 1
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AAI clade 9-27-9
medoid: GCA 005792865 1
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AAI clade 9-27-10
medoid: GCA 009693635 1
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AAI clade 9-27-11
medoid: GCA 903819815 1
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AAI clade 9-27-12
medoid: GCA 010365135 1
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AAI clade 9-27-13
medoid: GCF 900129545 1
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AAI clade 9-27-14
medoid: GCA 014377455 1
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AAI clade 9-27-15
medoid: GCA 014378065 1
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AAI clade 9-27-16
medoid: GCA 015234525 1
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AAI clade 9-27-17
medoid: GCA 015478765 1
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AAI clade 9-27-18
medoid: GCA 016714905 1
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AAI clade 9-27-19
medoid: GCA 016718345 1
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AAI clade 9-27-20
medoid: GCA 017984835 1
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AAI clade 9-27-21
medoid: GCF 003634755 1
8 datasets: GCA 017995345 1 (AAI: 82.64%), GCF 003312425 1 (AAI: 94.65%), GCF 003314435 2 (AAI: 93.73%), GCF 003350545 1 (AAI: 88.81%), GCF 003634755 1 (AAI: 100.0%), GCF 004349085 1 (AAI: 88.95%), GCF 900110375 1 (AAI: 95.7%), and GCF 900112975 1 (AAI: 89.32%)
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AAI clade 9-27-22
medoid: GCF 902506345 1
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AAI clade 9-27-23
medoid: GCA 903824755 1
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AAI clade 9-27-24
medoid: GCA 903913315 1
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AAI clade 9-27-25
medoid: GCA 903839195 1
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AAI clade 9-27-26
medoid: GCA 903842575 1
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AAI clade 9-27-27
medoid: GCA 903879875 1
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AAI clade 9-27-28
medoid: GCF 000252125 1
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AAI clade 9-27-29
medoid: GCF 900107635 1
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AAI clade 9-27-30
medoid: GCF 000419685 1
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AAI clade 9-27-31
medoid: GCF 013294025 1
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AAI clade 9-27-32
medoid: GCF 000812945 1
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AAI clade 9-27-33
medoid: GCF 013284035 1
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AAI clade 9-27-34
medoid: GCF 009764685 1
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AAI clade 9-27-35
medoid: GCF 900111965 1
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AAI clade 9-27-36
medoid: GCF 004349195 1
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AAI clade 9-27-37
medoid: GCF 003076455 1
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AAI clade 9-27-38
medoid: GCF 003076475 1
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AAI clade 9-27-39
medoid: GCF 003097635 1
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AAI clade 9-27-40
medoid: GCF 003097655 1
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AAI clade 9-27-41
medoid: GCF 003634455 1
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AAI clade 9-27-42
medoid: GCF 900142695 1
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AAI clade 9-27-43
medoid: GCF 004745595 1
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AAI clade 9-27-44
medoid: GCF 007109225 1
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AAI clade 9-27-45
medoid: GCF 018069925 1
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AAI clade 9-27-46
medoid: GCF 012911565 1
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AAI clade 9-27-47
medoid: GCF 900100375 1
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AAI clade 9-27-1
medoid: GCA 001800905 1
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AAI clade 9-28
medoid: GCF 012516355 1
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AAI clade 9-29
medoid: GCF 000520975 1
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AAI clade 9-30
medoid: GCA 016712535 1
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AAI clade 9-31
medoid: GCF 003944715 1
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AAI clade 9-32
medoid: GCF 014251635 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1