AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
    • AAI clade 9-1 medoid: GCF 003347605 1
    • AAI clade 9-2 medoid: GCA 003247185 1
    • AAI clade 9-3 medoid: GCA 007134085 1
    • AAI clade 9-4 medoid: GCF 002933815 1
    • AAI clade 9-5 medoid: GCF 014352875 1
    • AAI clade 9-6 medoid: GCF 009754945 1
    • AAI clade 9-7 medoid: GCF 002886045 1
    • AAI clade 9-8 medoid: GCA 017983975 1
    • AAI clade 9-9 medoid: GCA 002715485 1
    • AAI clade 9-10 medoid: GCA 002699205 1
    • AAI clade 9-11 medoid: GCF 003014695 1
    • AAI clade 9-12 medoid: GCA 902594485 1
    • AAI clade 9-13 medoid: GCA 016777965 1
    • AAI clade 9-14 medoid: GCF 007655305 1
    • AAI clade 9-15 medoid: GCA 903887845 1
    • AAI clade 9-16 medoid: GCA 016222975 1
    • AAI clade 9-17 medoid: GCA 016786885 1
    • AAI clade 9-18 medoid: GCA 017303795 1
    • AAI clade 9-19 medoid: GCF 015351595 1
    • AAI clade 9-20 medoid: GCA 002389765 1
    • AAI clade 9-21 medoid: GCA 013214355 1
    • AAI clade 9-22 medoid: GCF 011089895 1
      • AAI clade 9-22-1 medoid: GCA 001567275 1
      • AAI clade 9-22-2 medoid: GCF 014773275 1
      • AAI clade 9-22-3 medoid: GCF 011089895 1
        • AAI clade 9-22-3-1 medoid: GCA 002257025 1
        • AAI clade 9-22-3-2 medoid: GCF 006716645 1
        • AAI clade 9-22-3-3 medoid: GCA 014376655 1
          5 datasets: GCA 002403905 1 (AAI: 74.39%), GCA 014376655 1 (AAI: 100.0%), GCF 002797815 1 (AAI: 67.51%), GCF 007558865 1 (AAI: 76.66%), and GCF 018449775 1 (AAI: 75.66%)
        • AAI clade 9-22-3-4 medoid: GCF 002355435 1
        • AAI clade 9-22-3-5 medoid: GCA 007695095 1
        • AAI clade 9-22-3-6 medoid: GCA 903859135 1
        • AAI clade 9-22-3-7 medoid: GCA 008933805 1
        • AAI clade 9-22-3-8 medoid: GCA 009693575 1
        • AAI clade 9-22-3-9 medoid: GCA 009924095 1
        • AAI clade 9-22-3-10 medoid: GCA 009926405 1
        • AAI clade 9-22-3-11 medoid: GCA 012517435 1
        • AAI clade 9-22-3-12 medoid: GCA 013286985 1
        • AAI clade 9-22-3-13 medoid: GCF 900142915 1
        • AAI clade 9-22-3-14 medoid: GCA 018266915 1
        • AAI clade 9-22-3-15 medoid: GCF 009765905 1
        • AAI clade 9-22-3-16 medoid: GCA 013288205 1
        • AAI clade 9-22-3-17 medoid: GCA 013288485 1
        • AAI clade 9-22-3-18 medoid: GCF 900105165 1
        • AAI clade 9-22-3-19 medoid: GCA 013359235 1
        • AAI clade 9-22-3-20 medoid: GCA 013824115 1
        • AAI clade 9-22-3-21 medoid: GCA 014376805 1
        • AAI clade 9-22-3-22 medoid: GCF 010692725 1
        • AAI clade 9-22-3-23 medoid: GCA 014380615 1
        • AAI clade 9-22-3-24 medoid: GCA 016764115 1
        • AAI clade 9-22-3-25 medoid: GCA 016776505 1
        • AAI clade 9-22-3-26 medoid: GCA 902768715 1
        • AAI clade 9-22-3-27 medoid: GCA 017995405 1
        • AAI clade 9-22-3-28 medoid: GCA 018401955 1
        • AAI clade 9-22-3-29 medoid: GCF 009754915 1
        • AAI clade 9-22-3-30 medoid: GCA 903644075 1
        • AAI clade 9-22-3-31 medoid: GCA 903828245 1
        • AAI clade 9-22-3-32 medoid: GCA 903863845 1
        • AAI clade 9-22-3-33 medoid: GCA 903878265 1
        • AAI clade 9-22-3-34 medoid: GCA 903891475 1
        • AAI clade 9-22-3-35 medoid: GCF 003633615 1
        • AAI clade 9-22-3-36 medoid: GCA 903897855 1
        • AAI clade 9-22-3-37 medoid: GCA 903898215 1
        • AAI clade 9-22-3-38 medoid: GCA 903928285 1
        • AAI clade 9-22-3-39 medoid: GCA 903958995 1
        • AAI clade 9-22-3-40 medoid: GCF 002920915 1
        • AAI clade 9-22-3-41 medoid: GCF 001730525 1
        • AAI clade 9-22-3-42 medoid: GCF 013283875 1
        • AAI clade 9-22-3-43 medoid: GCF 003351025 1
        • AAI clade 9-22-3-44 medoid: GCF 004005815 1
        • AAI clade 9-22-3-45 medoid: GCF 007971525 1
        • AAI clade 9-22-3-46 medoid: GCF 008274585 1
        • AAI clade 9-22-3-47 medoid: GCF 009770985 1
        • AAI clade 9-22-3-48 medoid: GCF 009834915 1
        • AAI clade 9-22-3-49 medoid: GCF 011089895 1
        • AAI clade 9-22-3-50 medoid: GCF 017355835 1
      • AAI clade 9-22-4 medoid: GCF 000425145 1
      • AAI clade 9-22-5 medoid: GCA 016717725 1
    • AAI clade 9-23 medoid: GCA 013391385 1
    • AAI clade 9-24 medoid: GCF 018613605 1
    • AAI clade 9-25 medoid: GCA 016708845 1
    • AAI clade 9-26 medoid: GCF 900156415 1
    • AAI clade 9-27 medoid: GCF 004349195 1
    • AAI clade 9-28 medoid: GCF 012516355 1
    • AAI clade 9-29 medoid: GCF 000520975 1
    • AAI clade 9-30 medoid: GCA 016712535 1
    • AAI clade 9-31 medoid: GCF 003944715 1
    • AAI clade 9-32 medoid: GCF 014251635 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1