AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 9-2
medoid: GCA 003247185 1
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AAI clade 9-2-1
medoid: GCA 016780365 1
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AAI clade 9-2-2
medoid: GCA 002477505 1
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AAI clade 9-2-3
medoid: GCA 000961845 1
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AAI clade 9-2-4
medoid: GCA 000981645 1
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AAI clade 9-2-5
medoid: GCA 902168135 1
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AAI clade 9-2-6
medoid: GCA 002480215 1
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AAI clade 9-2-7
medoid: GCA 002863125 1
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AAI clade 9-2-8
medoid: GCA 905480095 1
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AAI clade 9-2-9
medoid: GCA 017983465 1
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AAI clade 9-2-10
medoid: GCA 002729115 1
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AAI clade 9-2-11
medoid: GCF 003143775 1
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AAI clade 9-2-12
medoid: GCA 903945495 1
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AAI clade 9-2-13
medoid: GCA 905181875 1
6 datasets: GCA 002336245 1 (AAI: 50.28%), GCA 002453255 1 (AAI: 88.54%), GCA 002707155 1 (AAI: 72.69%), GCA 002713215 1 (AAI: 54.54%), GCA 905181855 1 (AAI: 51.26%), and GCA 905181875 1 (AAI: 100.0%)
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AAI clade 9-2-14
medoid: GCA 002862785 1
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AAI clade 9-2-15
medoid: GCA 018401875 1
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AAI clade 9-2-16
medoid: GCA 905339165 1
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AAI clade 9-2-17
medoid: GCA 017857855 1
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AAI clade 9-2-18
medoid: GCA 003648625 1
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AAI clade 9-2-19
medoid: GCA 002840985 1
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AAI clade 9-2-20
medoid: GCA 016764395 1
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AAI clade 9-2-21
medoid: GCA 905479915 1
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AAI clade 9-2-22
medoid: GCA 903932685 1
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AAI clade 9-2-23
medoid: GCA 905479325 1
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AAI clade 9-2-24
medoid: GCA 018399335 1
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AAI clade 9-2-25
medoid: GCA 002427735 1
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AAI clade 9-2-26
medoid: GCA 018661505 1
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AAI clade 9-2-27
medoid: GCA 905182255 1
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AAI clade 9-2-28
medoid: GCA 002717515 1
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AAI clade 9-2-29
medoid: GCA 018669945 1
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AAI clade 9-2-30
medoid: GCA 002869365 1
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AAI clade 9-2-31
medoid: GCA 018665005 1
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AAI clade 9-2-32
medoid: GCA 905480225 1
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AAI clade 9-2-33
medoid: GCA 007129985 1
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AAI clade 9-2-34
medoid: GCA 009926125 1
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AAI clade 9-2-35
medoid: GCA 905478225 1
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AAI clade 9-2-36
medoid: GCA 016866335 1
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AAI clade 9-2-37
medoid: GCA 016192075 1
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AAI clade 9-2-38
medoid: GCA 018609055 1
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AAI clade 9-2-1
medoid: GCA 016780365 1
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AAI clade 9-3
medoid: GCA 007134085 1
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AAI clade 9-4
medoid: GCF 002933815 1
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AAI clade 9-5
medoid: GCF 014352875 1
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AAI clade 9-6
medoid: GCF 009754945 1
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AAI clade 9-7
medoid: GCF 002886045 1
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AAI clade 9-8
medoid: GCA 017983975 1
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AAI clade 9-9
medoid: GCA 002715485 1
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AAI clade 9-10
medoid: GCA 002699205 1
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AAI clade 9-11
medoid: GCF 003014695 1
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AAI clade 9-12
medoid: GCA 902594485 1
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AAI clade 9-13
medoid: GCA 016777965 1
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AAI clade 9-14
medoid: GCF 007655305 1
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AAI clade 9-15
medoid: GCA 903887845 1
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AAI clade 9-16
medoid: GCA 016222975 1
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AAI clade 9-17
medoid: GCA 016786885 1
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AAI clade 9-18
medoid: GCA 017303795 1
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AAI clade 9-19
medoid: GCF 015351595 1
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AAI clade 9-20
medoid: GCA 002389765 1
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AAI clade 9-21
medoid: GCA 013214355 1
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AAI clade 9-22
medoid: GCF 011089895 1
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AAI clade 9-23
medoid: GCA 013391385 1
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AAI clade 9-24
medoid: GCF 018613605 1
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AAI clade 9-25
medoid: GCA 016708845 1
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AAI clade 9-26
medoid: GCF 900156415 1
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AAI clade 9-27
medoid: GCF 004349195 1
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AAI clade 9-28
medoid: GCF 012516355 1
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AAI clade 9-29
medoid: GCF 000520975 1
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AAI clade 9-30
medoid: GCA 016712535 1
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AAI clade 9-31
medoid: GCF 003944715 1
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AAI clade 9-32
medoid: GCF 014251635 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1