AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 9-2
medoid: GCA 003247185 1
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AAI clade 9-3
medoid: GCA 007134085 1
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AAI clade 9-4
medoid: GCF 002933815 1
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AAI clade 9-5
medoid: GCF 014352875 1
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AAI clade 9-6
medoid: GCF 009754945 1
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AAI clade 9-7
medoid: GCF 002886045 1
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AAI clade 9-8
medoid: GCA 017983975 1
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AAI clade 9-9
medoid: GCA 002715485 1
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AAI clade 9-10
medoid: GCA 002699205 1
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AAI clade 9-11
medoid: GCF 003014695 1
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AAI clade 9-12
medoid: GCA 902594485 1
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AAI clade 9-13
medoid: GCA 016777965 1
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AAI clade 9-13-1
medoid: GCA 902599655 1
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AAI clade 9-13-2
medoid: GCA 014240005 1
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AAI clade 9-13-3
medoid: GCA 002731795 1
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AAI clade 9-13-4
medoid: GCA 013203115 1
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AAI clade 9-13-5
medoid: GCA 902562835 1
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AAI clade 9-13-6
medoid: GCA 002711465 1
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AAI clade 9-13-7
medoid: GCA 002170005 2
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AAI clade 9-13-8
medoid: GCA 002712245 1
5 datasets: GCA 002172545 1 (AAI: 61.67%), GCA 002712245 1 (AAI: 100.0%), GCA 002717765 1 (AAI: 65.68%), GCA 002724475 1 (AAI: 58.83%), and GCA 002724735 1 (AAI: 60.37%)
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AAI clade 9-13-9
medoid: GCA 002436185 1
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AAI clade 9-13-10
medoid: GCA 016845785 1
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AAI clade 9-13-11
medoid: GCA 002689995 1
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AAI clade 9-13-12
medoid: GCA 902602795 1
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AAI clade 9-13-13
medoid: GCA 002704685 1
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AAI clade 9-13-14
medoid: GCA 002705575 1
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AAI clade 9-13-15
medoid: GCA 018645565 1
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AAI clade 9-13-16
medoid: GCA 018651745 1
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AAI clade 9-13-17
medoid: GCA 016782645 1
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AAI clade 9-13-18
medoid: GCA 016784605 1
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AAI clade 9-13-1
medoid: GCA 902599655 1
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AAI clade 9-14
medoid: GCF 007655305 1
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AAI clade 9-15
medoid: GCA 903887845 1
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AAI clade 9-16
medoid: GCA 016222975 1
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AAI clade 9-17
medoid: GCA 016786885 1
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AAI clade 9-18
medoid: GCA 017303795 1
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AAI clade 9-19
medoid: GCF 015351595 1
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AAI clade 9-20
medoid: GCA 002389765 1
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AAI clade 9-21
medoid: GCA 013214355 1
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AAI clade 9-22
medoid: GCF 011089895 1
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AAI clade 9-23
medoid: GCA 013391385 1
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AAI clade 9-24
medoid: GCF 018613605 1
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AAI clade 9-25
medoid: GCA 016708845 1
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AAI clade 9-26
medoid: GCF 900156415 1
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AAI clade 9-27
medoid: GCF 004349195 1
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AAI clade 9-28
medoid: GCF 012516355 1
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AAI clade 9-29
medoid: GCF 000520975 1
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AAI clade 9-30
medoid: GCA 016712535 1
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AAI clade 9-31
medoid: GCF 003944715 1
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AAI clade 9-32
medoid: GCF 014251635 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1