AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
    • AAI clade 8-1 medoid: GCA 904418825 1
    • AAI clade 8-2 medoid: GCF 016316925 1
      • AAI clade 8-2-1 medoid: GCF 003614235 1
      • AAI clade 8-2-2 medoid: GCF 001038625 1
      • AAI clade 8-2-3 medoid: GCA 000466585 1
      • AAI clade 8-2-4 medoid: GCF 002934235 1
      • AAI clade 8-2-5 medoid: GCA 001515955 1
      • AAI clade 8-2-6 medoid: GCA 001770015 1
      • AAI clade 8-2-7 medoid: GCA 001805565 1
      • AAI clade 8-2-8 medoid: GCA 002298915 1
      • AAI clade 8-2-9 medoid: GCA 002299965 1
      • AAI clade 8-2-10 medoid: GCA 902774115 1
      • AAI clade 8-2-11 medoid: GCF 000816675 1
      • AAI clade 8-2-12 medoid: GCF 900095445 1
      • AAI clade 8-2-13 medoid: GCF 900129265 1
      • AAI clade 8-2-14 medoid: GCF 000495435 3
      • AAI clade 8-2-15 medoid: GCA 002747745 1
      • AAI clade 8-2-16 medoid: GCF 902143515 1
      • AAI clade 8-2-17 medoid: GCA 003488655 1
      • AAI clade 8-2-18 medoid: GCA 007131175 1
      • AAI clade 8-2-19 medoid: GCA 013287405 1
      • AAI clade 8-2-20 medoid: GCA 009778865 1
      • AAI clade 8-2-21 medoid: GCA 009787445 1
      • AAI clade 8-2-22 medoid: GCA 011682715 1
      • AAI clade 8-2-23 medoid: GCA 013203185 1
      • AAI clade 8-2-24 medoid: GCA 016937015 1
      • AAI clade 8-2-25 medoid: GCF 000270205 1
      • AAI clade 8-2-26 medoid: GCF 001675165 1
      • AAI clade 8-2-27 medoid: GCA 903889905 1
      • AAI clade 8-2-28 medoid: GCF 000008765 1
      • AAI clade 8-2-29 medoid: GCF 000577895 1
      • AAI clade 8-2-30 medoid: GCF 000389635 1
        5 datasets: GCF 000246895 1 (AAI: 72.24%), GCF 000389635 1 (AAI: 100.0%), GCF 000686725 1 (AAI: 60.17%), GCF 000807255 1 (AAI: 72.26%), and GCF 900176305 1 (AAI: 63.93%)
      • AAI clade 8-2-31 medoid: GCF 000297115 1
      • AAI clade 8-2-32 medoid: GCF 000755505 1
      • AAI clade 8-2-33 medoid: GCF 000619945 1
      • AAI clade 8-2-34 medoid: GCF 000744935 1
      • AAI clade 8-2-35 medoid: GCF 001020205 1
      • AAI clade 8-2-36 medoid: GCF 016908015 1
    • AAI clade 8-3 medoid: GCF 900113965 1
    • AAI clade 8-4 medoid: GCA 900547475 1
    • AAI clade 8-5 medoid: GCA 012728125 1
    • AAI clade 8-6 medoid: GCA 001000865 1
    • AAI clade 8-7 medoid: GCA 002786595 1
    • AAI clade 8-8 medoid: GCF 000173795 1
    • AAI clade 8-9 medoid: GCF 000159695 1
    • AAI clade 8-10 medoid: GCF 017161305 1
    • AAI clade 8-11 medoid: GCA 009785215 1
    • AAI clade 8-12 medoid: GCF 018223745 1
    • AAI clade 8-13 medoid: GCF 000266865 1
    • AAI clade 8-14 medoid: GCA 016281495 1
    • AAI clade 8-15 medoid: GCF 018861905 1
    • AAI clade 8-16 medoid: GCA 015056885 1
    • AAI clade 8-17 medoid: GCA 017936375 1
    • AAI clade 8-18 medoid: GCF 001436755 1
    • AAI clade 8-19 medoid: GCF 018437235 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1