AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 8-1
medoid: GCA 904418825 1
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AAI clade 8-1-1
medoid: GCA 904418825 1
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AAI clade 8-1-2
medoid: GCF 001299635 1
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AAI clade 8-1-3
medoid: GCF 000439105 1
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AAI clade 8-1-3-1
medoid: GCA 900315485 1
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AAI clade 8-1-3-2
medoid: GCF 000439105 1
8 datasets: GCA 017888745 1 (AAI: 75.53%), GCA 018648865 1 (AAI: 37.43%), GCA 900557165 1 (AAI: 70.31%), GCA 902363255 1 (AAI: 84.85%), GCF 000439105 1 (AAI: 100.0%), GCF 000808015 1 (AAI: 84.72%), GCF 014333445 1 (AAI: 71.68%), and GCF 900114105 1 (AAI: 94.3%)
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AAI clade 8-1-3-3
medoid: GCF 018917435 1
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AAI clade 8-1-3-1
medoid: GCA 900315485 1
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AAI clade 8-1-1
medoid: GCA 904418825 1
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AAI clade 8-2
medoid: GCF 016316925 1
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AAI clade 8-3
medoid: GCF 900113965 1
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AAI clade 8-4
medoid: GCA 900547475 1
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AAI clade 8-5
medoid: GCA 012728125 1
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AAI clade 8-6
medoid: GCA 001000865 1
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AAI clade 8-7
medoid: GCA 002786595 1
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AAI clade 8-8
medoid: GCF 000173795 1
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AAI clade 8-9
medoid: GCF 000159695 1
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AAI clade 8-10
medoid: GCF 017161305 1
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AAI clade 8-11
medoid: GCA 009785215 1
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AAI clade 8-12
medoid: GCF 018223745 1
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AAI clade 8-13
medoid: GCF 000266865 1
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AAI clade 8-14
medoid: GCA 016281495 1
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AAI clade 8-15
medoid: GCF 018861905 1
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AAI clade 8-16
medoid: GCA 015056885 1
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AAI clade 8-17
medoid: GCA 017936375 1
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AAI clade 8-18
medoid: GCF 001436755 1
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AAI clade 8-19
medoid: GCF 018437235 1
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AAI clade 8-1
medoid: GCA 904418825 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1