AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 7-1
medoid: GCF 000735435 1
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AAI clade 7-2
medoid: GCF 900476395 1
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AAI clade 7-3
medoid: GCF 013416325 1
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AAI clade 7-4
medoid: GCF 000302535 1
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AAI clade 7-5
medoid: GCF 003987045 1
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AAI clade 7-6
medoid: GCF 015163665 1
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AAI clade 7-7
medoid: GCA 004354085 1
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AAI clade 7-8
medoid: GCA 015484945 1
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AAI clade 7-8-1
medoid: GCA 015484945 1
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AAI clade 7-8-1-1
medoid: GCA 014762505 1
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AAI clade 7-8-1-2
medoid: GCA 000213395 2
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AAI clade 7-8-1-3
medoid: GCA 003645185 1
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AAI clade 7-8-1-4
medoid: GCA 016191235 1
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AAI clade 7-8-1-5
medoid: GCA 015484945 1
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AAI clade 7-8-1-6
medoid: GCA 001801635 1
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AAI clade 7-8-1-7
medoid: GCA 013002205 1
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AAI clade 7-8-1-8
medoid: GCA 009937625 1
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AAI clade 7-8-1-9
medoid: GCA 015231885 1
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AAI clade 7-8-1-10
medoid: GCF 005280755 1
6 datasets: GCA 001797285 1 (AAI: 49.87%), GCA 002732805 1 (AAI: 47.37%), GCA 002793195 1 (AAI: 47.65%), GCA 003450655 1 (AAI: 46.53%), GCA 018241585 1 (AAI: 47.08%), and GCF 005280755 1 (AAI: 100.0%)
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AAI clade 7-8-1-11
medoid: GCA 014239225 1
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AAI clade 7-8-1-12
medoid: GCA 002733135 1
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AAI clade 7-8-1-13
medoid: GCA 016209015 1
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AAI clade 7-8-1-14
medoid: GCA 017396005 1
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AAI clade 7-8-1-15
medoid: GCA 004554395 1
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AAI clade 7-8-1-16
medoid: GCA 002308435 1
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AAI clade 7-8-1-17
medoid: GCA 003989085 1
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AAI clade 7-8-1-18
medoid: GCA 015494165 1
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AAI clade 7-8-1-19
medoid: GCA 013316435 1
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AAI clade 7-8-1-20
medoid: GCA 002400905 2
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AAI clade 7-8-1-21
medoid: GCA 011321985 1
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AAI clade 7-8-1-22
medoid: GCA 905479195 1
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AAI clade 7-8-1-23
medoid: GCA 015494295 1
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AAI clade 7-8-1-24
medoid: GCA 002705445 1
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AAI clade 7-8-1-25
medoid: GCF 000156355 1
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AAI clade 7-8-1-26
medoid: GCA 002733505 1
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AAI clade 7-8-1-27
medoid: GCA 002862965 1
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AAI clade 7-8-1-28
medoid: GCA 003676145 1
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AAI clade 7-8-1-29
medoid: GCA 002897635 1
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AAI clade 7-8-1-30
medoid: GCA 003349885 1
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AAI clade 7-8-1-31
medoid: GCA 015491865 1
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AAI clade 7-8-1-32
medoid: GCA 003645215 1
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AAI clade 7-8-1-33
medoid: GCA 003558125 1
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AAI clade 7-8-1-34
medoid: GCA 016763355 1
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AAI clade 7-8-1-35
medoid: GCF 000787395 1
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AAI clade 7-8-1-36
medoid: GCA 009843675 1
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AAI clade 7-8-1-37
medoid: GCA 017854775 1
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AAI clade 7-8-1-38
medoid: GCA 013288825 1
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AAI clade 7-8-1-39
medoid: GCA 013695765 1
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AAI clade 7-8-1-40
medoid: GCA 018648825 1
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AAI clade 7-8-1-41
medoid: GCA 016744395 1
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AAI clade 7-8-1-42
medoid: GCA 017934275 1
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AAI clade 7-8-1-43
medoid: GCF 005047655 1
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AAI clade 7-8-1-1
medoid: GCA 014762505 1
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AAI clade 7-8-2
medoid: GCA 016704655 1
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AAI clade 7-8-3
medoid: GCA 016200465 1
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AAI clade 7-8-4
medoid: GCA 905612355 1
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AAI clade 7-8-5
medoid: GCF 000515215 1
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AAI clade 7-8-6
medoid: GCA 016720465 1
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AAI clade 7-8-7
medoid: GCA 013001045 1
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AAI clade 7-8-8
medoid: GCA 002729955 1
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AAI clade 7-8-9
medoid: GCA 007692435 1
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AAI clade 7-8-10
medoid: GCF 012044895 1
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AAI clade 7-8-11
medoid: GCA 009838035 1
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AAI clade 7-8-12
medoid: GCF 009734265 1
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AAI clade 7-8-13
medoid: GCF 000021485 1
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AAI clade 7-8-14
medoid: GCF 003347135 1
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AAI clade 7-8-1
medoid: GCA 015484945 1
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AAI clade 7-9
medoid: GCF 000310185 1
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AAI clade 7-10
medoid: GCA 000227525 2
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AAI clade 7-11
medoid: GCF 001650915 1
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AAI clade 7-12
medoid: GCA 900544345 1
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AAI clade 7-13
medoid: GCA 008081045 1
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AAI clade 7-14
medoid: GCF 002993325 1
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AAI clade 7-15
medoid: GCF 900114355 1
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AAI clade 7-16
medoid: GCF 016653465 1
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AAI clade 7-17
medoid: GCF 001591365 1
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AAI clade 7-18
medoid: GCF 900114735 1
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AAI clade 7-19
medoid: GCA 007131235 1
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AAI clade 7-1
medoid: GCF 000735435 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1