AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
    • AAI clade 6-1 medoid: GCF 000336775 1
    • AAI clade 6-2 medoid: GCA 013153105 1
      • AAI clade 6-2-1 medoid: GCA 001189275 1
      • AAI clade 6-2-2 medoid: GCA 000016605 1
        5 datasets: GCA 000016605 1 (AAI: 100.0%), GCF 000204925 1 (AAI: 59.97%), GCF 000243315 1 (AAI: 56.66%), GCF 003201675 2 (AAI: 63.16%), and GCF 013343295 1 (AAI: 58.6%)
      • AAI clade 6-2-3 medoid: GCA 015662595 1
      • AAI clade 6-2-4 medoid: GCF 009729055 1
      • AAI clade 6-2-5 medoid: GCF 000144915 1
      • AAI clade 6-2-6 medoid: GCA 000508305 1
      • AAI clade 6-2-7 medoid: GCF 009729015 1
      • AAI clade 6-2-8 medoid: GCF 000193375 1
      • AAI clade 6-2-9 medoid: GCF 000148385 1
      • AAI clade 6-2-10 medoid: GCA 002508315 1
      • AAI clade 6-2-11 medoid: GCA 003649515 1
      • AAI clade 6-2-12 medoid: GCF 000015945 1
      • AAI clade 6-2-13 medoid: GCA 015661855 1
      • AAI clade 6-2-14 medoid: GCA 013154355 1
      • AAI clade 6-2-15 medoid: GCA 003661745 1
      • AAI clade 6-2-16 medoid: GCF 000186365 1
      • AAI clade 6-2-17 medoid: GCF 008326425 1
      • AAI clade 6-2-18 medoid: GCF 000018305 1
      • AAI clade 6-2-19 medoid: GCF 000317795 1
      • AAI clade 6-2-20 medoid: GCA 011055275 1
      • AAI clade 6-2-21 medoid: GCA 002728275 1
      • AAI clade 6-2-22 medoid: GCA 002855745 1
      • AAI clade 6-2-23 medoid: GCA 002899805 1
      • AAI clade 6-2-24 medoid: GCA 003019535 1
      • AAI clade 6-2-25 medoid: GCA 003086555 1
      • AAI clade 6-2-26 medoid: GCA 003116855 1
      • AAI clade 6-2-27 medoid: GCA 015521385 1
      • AAI clade 6-2-28 medoid: GCA 003649205 1
      • AAI clade 6-2-29 medoid: GCA 003650815 1
      • AAI clade 6-2-30 medoid: GCA 003649495 1
      • AAI clade 6-2-31 medoid: GCA 003649565 1
      • AAI clade 6-2-32 medoid: GCA 003649665 1
      • AAI clade 6-2-33 medoid: GCF 001412615 1
      • AAI clade 6-2-34 medoid: GCA 013152575 1
      • AAI clade 6-2-35 medoid: GCF 000017945 1
      • AAI clade 6-2-36 medoid: GCA 013154205 1
      • AAI clade 6-2-37 medoid: GCA 015521185 1
      • AAI clade 6-2-38 medoid: GCA 015520265 1
      • AAI clade 6-2-39 medoid: GCA 015521195 1
      • AAI clade 6-2-40 medoid: GCA 015522645 1
      • AAI clade 6-2-41 medoid: GCF 000011125 1
      • AAI clade 6-2-42 medoid: GCA 015521775 1
      • AAI clade 6-2-43 medoid: GCA 015523575 1
      • AAI clade 6-2-44 medoid: GCA 017857195 1
      • AAI clade 6-2-45 medoid: GCA 017857595 1
      • AAI clade 6-2-46 medoid: GCF 019175345 1
      • AAI clade 6-2-47 medoid: GCF 000092185 1
    • AAI clade 6-3 medoid: GCF 000223905 1
    • AAI clade 6-4 medoid: GCA 012798025 1
    • AAI clade 6-5 medoid: GCF 006740685 1
    • AAI clade 6-6 medoid: GCA 017935945 1
    • AAI clade 6-7 medoid: GCA 000690595 2
    • AAI clade 6-8 medoid: GCF 018228765 1
    • AAI clade 6-9 medoid: GCA 015521605 1
    • AAI clade 6-10 medoid: GCA 002506275 1
    • AAI clade 6-11 medoid: GCA 018396875 1
    • AAI clade 6-12 medoid: GCF 000969905 1
    • AAI clade 6-13 medoid: GCA 002067325 1
    • AAI clade 6-14 medoid: GCA 002762865 1
    • AAI clade 6-15 medoid: GCF 000025525 1
    • AAI clade 6-16 medoid: GCF 000025505 1
    • AAI clade 6-17 medoid: GCA 017608985 1
    • AAI clade 6-18 medoid: GCA 005878985 1
    • AAI clade 6-19 medoid: GCF 001017125 1
    • AAI clade 6-20 medoid: GCA 016840855 1
    • AAI clade 6-21 medoid: GCA 902560445 1
    • AAI clade 6-22 medoid: GCA 005881695 1
    • AAI clade 6-23 medoid: GCA 005222975 1
    • AAI clade 6-24 medoid: GCF 007826885 1
    • AAI clade 6-25 medoid: GCA 902784195 1
    • AAI clade 6-26 medoid: GCA 015062915 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1