AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
    • AAI clade 6-1 medoid: GCF 000336775 1
    • AAI clade 6-2 medoid: GCA 013153105 1
    • AAI clade 6-3 medoid: GCF 000223905 1
    • AAI clade 6-4 medoid: GCA 012798025 1
    • AAI clade 6-5 medoid: GCF 006740685 1
    • AAI clade 6-6 medoid: GCA 017935945 1
    • AAI clade 6-7 medoid: GCA 000690595 2
    • AAI clade 6-8 medoid: GCF 018228765 1
    • AAI clade 6-9 medoid: GCA 015521605 1
    • AAI clade 6-10 medoid: GCA 002506275 1
    • AAI clade 6-11 medoid: GCA 018396875 1
    • AAI clade 6-12 medoid: GCF 000969905 1
    • AAI clade 6-13 medoid: GCA 002067325 1
    • AAI clade 6-14 medoid: GCA 002762865 1
    • AAI clade 6-15 medoid: GCF 000025525 1
      • AAI clade 6-15-1 medoid: GCA 002687735 1
      • AAI clade 6-15-2 medoid: GCA 001563905 1
      • AAI clade 6-15-3 medoid: GCA 003663115 1
      • AAI clade 6-15-4 medoid: GCA 902385225 1
      • AAI clade 6-15-5 medoid: GCA 002763225 1
      • AAI clade 6-15-6 medoid: GCA 017610205 1
        7 datasets: GCA 002779065 1 (AAI: 41.5%), GCA 017608725 1 (AAI: 48.23%), GCA 017608775 1 (AAI: 39.29%), GCA 017609985 1 (AAI: 44.52%), GCA 017610175 1 (AAI: 46.43%), GCA 017610205 1 (AAI: 100.0%), and GCA 018813975 1 (AAI: 42.88%)
      • AAI clade 6-15-7 medoid: GCA 903916665 1
      • AAI clade 6-15-8 medoid: GCA 015521565 1
      • AAI clade 6-15-9 medoid: GCA 002923215 1
      • AAI clade 6-15-10 medoid: GCF 002201895 1
      • AAI clade 6-15-11 medoid: GCF 000025525 1
      • AAI clade 6-15-12 medoid: GCA 013425375 1
      • AAI clade 6-15-13 medoid: GCA 015523155 1
      • AAI clade 6-15-14 medoid: GCA 015661585 1
      • AAI clade 6-15-15 medoid: GCA 902384675 1
      • AAI clade 6-15-16 medoid: GCF 000016125 1
      • AAI clade 6-15-17 medoid: GCF 017875395 1
    • AAI clade 6-16 medoid: GCF 000025505 1
    • AAI clade 6-17 medoid: GCA 017608985 1
    • AAI clade 6-18 medoid: GCA 005878985 1
    • AAI clade 6-19 medoid: GCF 001017125 1
    • AAI clade 6-20 medoid: GCA 016840855 1
    • AAI clade 6-21 medoid: GCA 902560445 1
    • AAI clade 6-22 medoid: GCA 005881695 1
    • AAI clade 6-23 medoid: GCA 005222975 1
    • AAI clade 6-24 medoid: GCF 007826885 1
    • AAI clade 6-25 medoid: GCA 902784195 1
    • AAI clade 6-26 medoid: GCA 015062915 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1