AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
    • AAI clade 6-1 medoid: GCF 000336775 1
    • AAI clade 6-2 medoid: GCA 013153105 1
    • AAI clade 6-3 medoid: GCF 000223905 1
    • AAI clade 6-4 medoid: GCA 012798025 1
    • AAI clade 6-5 medoid: GCF 006740685 1
    • AAI clade 6-6 medoid: GCA 017935945 1
    • AAI clade 6-7 medoid: GCA 000690595 2
    • AAI clade 6-8 medoid: GCF 018228765 1
    • AAI clade 6-9 medoid: GCA 015521605 1
    • AAI clade 6-10 medoid: GCA 002506275 1
    • AAI clade 6-11 medoid: GCA 018396875 1
    • AAI clade 6-12 medoid: GCF 000969905 1
    • AAI clade 6-13 medoid: GCA 002067325 1
    • AAI clade 6-14 medoid: GCA 002762865 1
      • AAI clade 6-14-1 medoid: GCA 002762865 1
      • AAI clade 6-14-2 medoid: GCA 018303685 1
        • AAI clade 6-14-2-1 medoid: GCA 018303685 1
          • AAI clade 6-14-2-1-1 medoid: GCA 000830315 1
          • AAI clade 6-14-2-1-2 medoid: GCA 013329175 1
          • AAI clade 6-14-2-1-3 medoid: GCA 013330825 1
          • AAI clade 6-14-2-1-4 medoid: GCA 016177315 1
          • AAI clade 6-14-2-1-5 medoid: GCA 016177345 1
          • AAI clade 6-14-2-1-6 medoid: GCA 016177615 1
          • AAI clade 6-14-2-1-7 medoid: GCA 016180035 1
          • AAI clade 6-14-2-1-8 medoid: GCA 016180285 1
          • AAI clade 6-14-2-1-9 medoid: GCA 018303685 1
            4 datasets: GCA 016181305 1 (AAI: 77.44%), GCA 016187465 1 (AAI: 58.31%), GCA 018303645 1 (AAI: 58.91%), and GCA 018303685 1 (AAI: 100.0%)
          • AAI clade 6-14-2-1-10 medoid: GCA 016181325 1
          • AAI clade 6-14-2-1-11 medoid: GCA 016185555 1
          • AAI clade 6-14-2-1-12 medoid: GCA 016185755 1
          • AAI clade 6-14-2-1-13 medoid: GCA 016188245 1
          • AAI clade 6-14-2-1-14 medoid: GCA 018303655 1
          • AAI clade 6-14-2-1-15 medoid: GCA 016185845 1
          • AAI clade 6-14-2-1-16 medoid: GCA 016185915 1
          • AAI clade 6-14-2-1-17 medoid: GCA 016185945 1
          • AAI clade 6-14-2-1-18 medoid: GCA 016188215 1
          • AAI clade 6-14-2-1-19 medoid: GCA 016192955 1
          • AAI clade 6-14-2-1-20 medoid: GCA 016192985 1
          • AAI clade 6-14-2-1-21 medoid: GCA 016203335 1
          • AAI clade 6-14-2-1-22 medoid: GCA 016211195 1
          • AAI clade 6-14-2-1-23 medoid: GCA 016211245 1
          • AAI clade 6-14-2-1-24 medoid: GCA 016219835 1
          • AAI clade 6-14-2-1-25 medoid: GCA 018303105 1
          • AAI clade 6-14-2-1-26 medoid: GCA 018303125 1
          • AAI clade 6-14-2-1-27 medoid: GCA 018303225 1
          • AAI clade 6-14-2-1-28 medoid: GCA 018303405 1
          • AAI clade 6-14-2-1-29 medoid: GCA 018303575 1
          • AAI clade 6-14-2-1-30 medoid: GCA 018303705 1
          • AAI clade 6-14-2-1-31 medoid: GCA 018816705 1
          • AAI clade 6-14-2-1-32 medoid: GCA 903907555 1
        • AAI clade 6-14-2-2 medoid: GCA 016184145 1
        • AAI clade 6-14-2-3 medoid: GCA 902385765 1
        • AAI clade 6-14-2-4 medoid: GCA 003560545 1
        • AAI clade 6-14-2-5 medoid: GCA 016184345 1
        • AAI clade 6-14-2-6 medoid: GCA 016180135 1
        • AAI clade 6-14-2-7 medoid: GCA 018302185 1
        • AAI clade 6-14-2-8 medoid: GCA 016208715 1
    • AAI clade 6-15 medoid: GCF 000025525 1
    • AAI clade 6-16 medoid: GCF 000025505 1
    • AAI clade 6-17 medoid: GCA 017608985 1
    • AAI clade 6-18 medoid: GCA 005878985 1
    • AAI clade 6-19 medoid: GCF 001017125 1
    • AAI clade 6-20 medoid: GCA 016840855 1
    • AAI clade 6-21 medoid: GCA 902560445 1
    • AAI clade 6-22 medoid: GCA 005881695 1
    • AAI clade 6-23 medoid: GCA 005222975 1
    • AAI clade 6-24 medoid: GCF 007826885 1
    • AAI clade 6-25 medoid: GCA 902784195 1
    • AAI clade 6-26 medoid: GCA 015062915 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1