AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: GCA 017502845 1
• AAI clade 2 medoid: GCA 002434265 1
• AAI clade 3 medoid: GCA 013002175 1
• AAI clade 4 medoid: GCA 900110395 1
• AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 5-1 medoid: GCA 017449415 1
  • AAI clade 5-2 medoid: GCF 000381045 1
  • AAI clade 5-3 medoid: GCF 015206895 1
  • AAI clade 5-4 medoid: GCA 003280985 1
  • AAI clade 5-5 medoid: GCF 900142025 1
  • AAI clade 5-6 medoid: GCF 014205895 1
  • AAI clade 5-7 medoid: GCA 002747175 1
    • AAI clade 5-7-1 medoid: GCF 000745975 1
    • AAI clade 5-7-2 medoid: GCF 900129305 1
    • AAI clade 5-7-3 medoid: GCA 002747175 1
      • AAI clade 5-7-3-1 medoid: GCA 013287855 1
      • AAI clade 5-7-3-2 medoid: GCA 012728875 1
      • AAI clade 5-7-3-3 medoid: GCA 007118765 1
      • AAI clade 5-7-3-4 medoid: GCA 002747175 1
        • AAI clade 5-7-3-4-1 medoid: GCA 000522425 1
        • AAI clade 5-7-3-4-2 medoid: GCA 016875255 1
        • AAI clade 5-7-3-4-3 medoid: GCA 002747175 1
        • AAI clade 5-7-3-4-4 medoid: GCF 000875975 1
        • AAI clade 5-7-3-4-5 medoid: GCA 007135085 1
          5 datasets: GCA 007119595 1 (AAI: 57.78%), GCA 007120035 1 (AAI: 55.05%), GCA 007135085 1 (AAI: 100.0%), GCA 013697635 1 (AAI: 50.92%), and GCF 003258315 1 (AAI: 48.32%)
        • AAI clade 5-7-3-4-6 medoid: GCF 013761005 1
        • AAI clade 5-7-3-4-7 medoid: GCA 903857665 1
        • AAI clade 5-7-3-4-8 medoid: GCF 006175995 1
        • AAI clade 5-7-3-4-9 medoid: GCF 900101345 1
      • AAI clade 5-7-3-5 medoid: GCA 000753945 1
      • AAI clade 5-7-3-6 medoid: GCA 004193595 1
      • AAI clade 5-7-3-7 medoid: GCA 016207645 1
      • AAI clade 5-7-3-8 medoid: GCA 001873745 1
      • AAI clade 5-7-3-9 medoid: GCA 014382905 1
      • AAI clade 5-7-3-10 medoid: GCA 003153015 1
      • AAI clade 5-7-3-11 medoid: GCA 012959665 1
    • AAI clade 5-7-4 medoid: GCA 015662865 1
  • AAI clade 5-8 medoid: GCF 002532075 1
  • AAI clade 5-9 medoid: GCA 016179875 1
  • AAI clade 5-10 medoid: GCA 002869845 2
  • AAI clade 5-11 medoid: GCA 016235875 1
  • AAI clade 5-12 medoid: GCA 905612265 1
  • AAI clade 5-13 medoid: GCF 014201315 1
  • AAI clade 5-14 medoid: GCA 003167255 1
  • AAI clade 5-15 medoid: GCA 013152765 1
  • AAI clade 5-16 medoid: GCA 009845545 1
  • AAI clade 5-17 medoid: GCF 003003925 1
  • AAI clade 5-18 medoid: GCA 016182975 1
  • AAI clade 5-19 medoid: GCA 015484715 1
  • AAI clade 5-20 medoid: GCA 017510075 1
  • AAI clade 5-21 medoid: GCA 015222205 1
  • AAI clade 5-22 medoid: GCA 013813355 1
  • AAI clade 5-23 medoid: GCA 016706275 1
  • AAI clade 5-24 medoid: GCA 003554615 1
  • AAI clade 5-25 medoid: GCA 003448875 1
  • AAI clade 5-26 medoid: GCA 017622235 1
  • AAI clade 5-27 medoid: GCA 001919715 1
  • AAI clade 5-28 medoid: GCA 017883385 1
  • AAI clade 5-29 medoid: GCA 001805765 1
  • AAI clade 5-30 medoid: GCF 002251945 1
  • AAI clade 5-31 medoid: GCA 005888435 1
  • AAI clade 5-32 medoid: GCA 003222055 1
  • AAI clade 5-33 medoid: GCA 005889085 1
  • AAI clade 5-34 medoid: GCA 016741895 1
• AAI clade 6 medoid: GCA 013415575 1
• AAI clade 7 medoid: GCF 008638345 1
• AAI clade 8 medoid: GCF 000807255 1
• AAI clade 9 medoid: GCF 001050135 1
• AAI clade 10 medoid: GCA 002717245 1
• AAI clade 11 medoid: GCA 017478625 1
• AAI clade 12 medoid: GCA 009773355 1
• AAI clade 13 medoid: GCA 905200435 1
• AAI clade 14 medoid: GCA 017516885 1
• AAI clade 15 medoid: GCA 004321885 1
• AAI clade 16 medoid: GCA 905236305 1
• AAI clade 17 medoid: GCA 017648525 1
• AAI clade 18 medoid: GCA 019113065 1
• AAI clade 19 medoid: GCA 016795075 1
• AAI clade 20 medoid: GCF 001467025 1
• AAI clade 21 medoid: GCA 017642855 1
• AAI clade 22 medoid: GCA 017408305 1
• AAI clade 23 medoid: GCA 002436405 1