AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 5-1
medoid: GCA 017449415 1
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AAI clade 5-2
medoid: GCF 000381045 1
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AAI clade 5-3
medoid: GCF 015206895 1
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AAI clade 5-4
medoid: GCA 003280985 1
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AAI clade 5-5
medoid: GCF 900142025 1
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AAI clade 5-6
medoid: GCF 014205895 1
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AAI clade 5-7
medoid: GCA 002747175 1
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AAI clade 5-7-1
medoid: GCF 000745975 1
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AAI clade 5-7-2
medoid: GCF 900129305 1
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AAI clade 5-7-3
medoid: GCA 002747175 1
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AAI clade 5-7-3-1
medoid: GCA 013287855 1
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AAI clade 5-7-3-2
medoid: GCA 012728875 1
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AAI clade 5-7-3-2-1
medoid: GCA 000404785 1
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AAI clade 5-7-3-2-2
medoid: GCA 012522635 1
6 datasets: GCA 002435865 1 (AAI: 50.59%), GCA 002841975 1 (AAI: 52.46%), GCA 012516855 1 (AAI: 60.49%), GCA 012522635 1 (AAI: 100.0%), GCA 012728875 1 (AAI: 71.73%), and GCA 017995495 1 (AAI: 59.83%)
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AAI clade 5-7-3-2-3
medoid: GCA 003564155 1
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AAI clade 5-7-3-2-4
medoid: GCA 016927675 1
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AAI clade 5-7-3-2-1
medoid: GCA 000404785 1
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AAI clade 5-7-3-3
medoid: GCA 007118765 1
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AAI clade 5-7-3-4
medoid: GCA 002747175 1
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AAI clade 5-7-3-5
medoid: GCA 000753945 1
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AAI clade 5-7-3-6
medoid: GCA 004193595 1
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AAI clade 5-7-3-7
medoid: GCA 016207645 1
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AAI clade 5-7-3-8
medoid: GCA 001873745 1
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AAI clade 5-7-3-9
medoid: GCA 014382905 1
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AAI clade 5-7-3-10
medoid: GCA 003153015 1
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AAI clade 5-7-3-11
medoid: GCA 012959665 1
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AAI clade 5-7-3-1
medoid: GCA 013287855 1
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AAI clade 5-7-4
medoid: GCA 015662865 1
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AAI clade 5-7-1
medoid: GCF 000745975 1
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AAI clade 5-8
medoid: GCF 002532075 1
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AAI clade 5-9
medoid: GCA 016179875 1
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AAI clade 5-10
medoid: GCA 002869845 2
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AAI clade 5-11
medoid: GCA 016235875 1
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AAI clade 5-12
medoid: GCA 905612265 1
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AAI clade 5-13
medoid: GCF 014201315 1
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AAI clade 5-14
medoid: GCA 003167255 1
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AAI clade 5-15
medoid: GCA 013152765 1
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AAI clade 5-16
medoid: GCA 009845545 1
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AAI clade 5-17
medoid: GCF 003003925 1
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AAI clade 5-18
medoid: GCA 016182975 1
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AAI clade 5-19
medoid: GCA 015484715 1
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AAI clade 5-20
medoid: GCA 017510075 1
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AAI clade 5-21
medoid: GCA 015222205 1
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AAI clade 5-22
medoid: GCA 013813355 1
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AAI clade 5-23
medoid: GCA 016706275 1
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AAI clade 5-24
medoid: GCA 003554615 1
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AAI clade 5-25
medoid: GCA 003448875 1
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AAI clade 5-26
medoid: GCA 017622235 1
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AAI clade 5-27
medoid: GCA 001919715 1
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AAI clade 5-28
medoid: GCA 017883385 1
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AAI clade 5-29
medoid: GCA 001805765 1
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AAI clade 5-30
medoid: GCF 002251945 1
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AAI clade 5-31
medoid: GCA 005888435 1
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AAI clade 5-32
medoid: GCA 003222055 1
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AAI clade 5-33
medoid: GCA 005889085 1
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AAI clade 5-34
medoid: GCA 016741895 1
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AAI clade 5-1
medoid: GCA 017449415 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1