AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
    • AAI clade 5-1 medoid: GCA 017449415 1
    • AAI clade 5-2 medoid: GCF 000381045 1
    • AAI clade 5-3 medoid: GCF 015206895 1
    • AAI clade 5-4 medoid: GCA 003280985 1
    • AAI clade 5-5 medoid: GCF 900142025 1
    • AAI clade 5-6 medoid: GCF 014205895 1
    • AAI clade 5-7 medoid: GCA 002747175 1
      • AAI clade 5-7-1 medoid: GCF 000745975 1
      • AAI clade 5-7-2 medoid: GCF 900129305 1
        • AAI clade 5-7-2-1 medoid: GCA 016844935 1
        • AAI clade 5-7-2-2 medoid: GCA 011322625 1
        • AAI clade 5-7-2-3 medoid: GCA 012517775 1
        • AAI clade 5-7-2-4 medoid: GCA 001797675 1
        • AAI clade 5-7-2-5 medoid: GCA 001797745 1
        • AAI clade 5-7-2-6 medoid: GCA 016874935 1
        • AAI clade 5-7-2-7 medoid: GCF 900129305 1
        • AAI clade 5-7-2-8 medoid: GCA 003605055 1
        • AAI clade 5-7-2-9 medoid: GCA 002779455 1
        • AAI clade 5-7-2-10 medoid: GCA 011042035 1
          8 datasets: GCA 002050025 1 (AAI: 51.77%), GCA 003599015 1 (AAI: 52.15%), GCA 003646865 1 (AAI: 64.98%), GCA 003646975 1 (AAI: 54.08%), GCA 003646995 1 (AAI: 70.28%), GCA 011042035 1 (AAI: 100.0%), GCA 016208165 1 (AAI: 46.36%), and GCA 016930835 1 (AAI: 52.06%)
        • AAI clade 5-7-2-11 medoid: GCA 012719415 1
        • AAI clade 5-7-2-12 medoid: GCA 003194495 1
        • AAI clade 5-7-2-13 medoid: GCA 015489315 1
        • AAI clade 5-7-2-14 medoid: GCA 018399535 1
        • AAI clade 5-7-2-15 medoid: GCA 900498135 1
        • AAI clade 5-7-2-16 medoid: GCA 016197285 1
        • AAI clade 5-7-2-17 medoid: GCA 003520425 1
        • AAI clade 5-7-2-18 medoid: GCA 013375385 1
        • AAI clade 5-7-2-19 medoid: GCA 016218975 1
        • AAI clade 5-7-2-20 medoid: GCA 007131755 1
        • AAI clade 5-7-2-21 medoid: GCA 007280345 1
        • AAI clade 5-7-2-22 medoid: GCA 009840385 1
        • AAI clade 5-7-2-23 medoid: GCA 016212245 1
        • AAI clade 5-7-2-24 medoid: GCA 016875165 1
        • AAI clade 5-7-2-25 medoid: GCA 016212935 1
        • AAI clade 5-7-2-26 medoid: GCA 015486965 1
        • AAI clade 5-7-2-27 medoid: GCA 015492495 1
        • AAI clade 5-7-2-28 medoid: GCA 016203765 1
      • AAI clade 5-7-3 medoid: GCA 002747175 1
      • AAI clade 5-7-4 medoid: GCA 015662865 1
    • AAI clade 5-8 medoid: GCF 002532075 1
    • AAI clade 5-9 medoid: GCA 016179875 1
    • AAI clade 5-10 medoid: GCA 002869845 2
    • AAI clade 5-11 medoid: GCA 016235875 1
    • AAI clade 5-12 medoid: GCA 905612265 1
    • AAI clade 5-13 medoid: GCF 014201315 1
    • AAI clade 5-14 medoid: GCA 003167255 1
    • AAI clade 5-15 medoid: GCA 013152765 1
    • AAI clade 5-16 medoid: GCA 009845545 1
    • AAI clade 5-17 medoid: GCF 003003925 1
    • AAI clade 5-18 medoid: GCA 016182975 1
    • AAI clade 5-19 medoid: GCA 015484715 1
    • AAI clade 5-20 medoid: GCA 017510075 1
    • AAI clade 5-21 medoid: GCA 015222205 1
    • AAI clade 5-22 medoid: GCA 013813355 1
    • AAI clade 5-23 medoid: GCA 016706275 1
    • AAI clade 5-24 medoid: GCA 003554615 1
    • AAI clade 5-25 medoid: GCA 003448875 1
    • AAI clade 5-26 medoid: GCA 017622235 1
    • AAI clade 5-27 medoid: GCA 001919715 1
    • AAI clade 5-28 medoid: GCA 017883385 1
    • AAI clade 5-29 medoid: GCA 001805765 1
    • AAI clade 5-30 medoid: GCF 002251945 1
    • AAI clade 5-31 medoid: GCA 005888435 1
    • AAI clade 5-32 medoid: GCA 003222055 1
    • AAI clade 5-33 medoid: GCA 005889085 1
    • AAI clade 5-34 medoid: GCA 016741895 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1