AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
    • AAI clade 5-1 medoid: GCA 017449415 1
    • AAI clade 5-2 medoid: GCF 000381045 1
    • AAI clade 5-3 medoid: GCF 015206895 1
      • AAI clade 5-3-1 medoid: GCF 900009265 2
      • AAI clade 5-3-2 medoid: GCF 000169335 1
      • AAI clade 5-3-3 medoid: GCF 002368295 1
      • AAI clade 5-3-4 medoid: GCF 013177315 1
        • AAI clade 5-3-4-1 medoid: GCA 015272515 1
        • AAI clade 5-3-4-2 medoid: GCA 001890975 1
        • AAI clade 5-3-4-3 medoid: GCA 015272325 1
        • AAI clade 5-3-4-4 medoid: GCF 013177315 1
          3 datasets: GCA 003695655 1 (AAI: 74.33%), GCF 001548395 1 (AAI: 92.78%), and GCF 013177315 1 (AAI: 100.0%)
        • AAI clade 5-3-4-5 medoid: GCA 011390515 1
        • AAI clade 5-3-4-6 medoid: GCA 012031415 1
        • AAI clade 5-3-4-7 medoid: GCA 012031475 1
        • AAI clade 5-3-4-8 medoid: GCA 012032745 1
        • AAI clade 5-3-4-9 medoid: GCA 012034615 1
        • AAI clade 5-3-4-10 medoid: GCF 003003795 1
        • AAI clade 5-3-4-11 medoid: GCA 014380935 1
        • AAI clade 5-3-4-12 medoid: GCA 015207365 1
        • AAI clade 5-3-4-13 medoid: GCA 015272205 1
        • AAI clade 5-3-4-14 medoid: GCA 015272465 1
        • AAI clade 5-3-4-15 medoid: GCA 902806435 1
        • AAI clade 5-3-4-16 medoid: GCA 903897715 1
        • AAI clade 5-3-4-17 medoid: GCF 003846445 1
        • AAI clade 5-3-4-18 medoid: GCF 000011385 1
        • AAI clade 5-3-4-19 medoid: GCF 000238775 1
        • AAI clade 5-3-4-20 medoid: GCF 000332275 1
        • AAI clade 5-3-4-21 medoid: GCF 000332315 1
        • AAI clade 5-3-4-22 medoid: GCF 000775285 1
        • AAI clade 5-3-4-23 medoid: GCF 001870225 1
        • AAI clade 5-3-4-24 medoid: GCF 003231495 1
        • AAI clade 5-3-4-25 medoid: GCF 012295525 1
        • AAI clade 5-3-4-26 medoid: GCF 014696065 1
      • AAI clade 5-3-5 medoid: GCF 014698045 1
      • AAI clade 5-3-6 medoid: GCA 007693465 1
      • AAI clade 5-3-7 medoid: GCF 014695175 1
      • AAI clade 5-3-8 medoid: GCF 014696135 1
      • AAI clade 5-3-9 medoid: GCF 001942495 1
      • AAI clade 5-3-10 medoid: GCF 018282115 1
      • AAI clade 5-3-11 medoid: GCF 015206895 1
      • AAI clade 5-3-12 medoid: GCF 002368115 1
      • AAI clade 5-3-13 medoid: GCF 008386235 1
      • AAI clade 5-3-14 medoid: GCF 001693275 1
      • AAI clade 5-3-15 medoid: GCA 014695195 1
    • AAI clade 5-4 medoid: GCA 003280985 1
    • AAI clade 5-5 medoid: GCF 900142025 1
    • AAI clade 5-6 medoid: GCF 014205895 1
    • AAI clade 5-7 medoid: GCA 002747175 1
    • AAI clade 5-8 medoid: GCF 002532075 1
    • AAI clade 5-9 medoid: GCA 016179875 1
    • AAI clade 5-10 medoid: GCA 002869845 2
    • AAI clade 5-11 medoid: GCA 016235875 1
    • AAI clade 5-12 medoid: GCA 905612265 1
    • AAI clade 5-13 medoid: GCF 014201315 1
    • AAI clade 5-14 medoid: GCA 003167255 1
    • AAI clade 5-15 medoid: GCA 013152765 1
    • AAI clade 5-16 medoid: GCA 009845545 1
    • AAI clade 5-17 medoid: GCF 003003925 1
    • AAI clade 5-18 medoid: GCA 016182975 1
    • AAI clade 5-19 medoid: GCA 015484715 1
    • AAI clade 5-20 medoid: GCA 017510075 1
    • AAI clade 5-21 medoid: GCA 015222205 1
    • AAI clade 5-22 medoid: GCA 013813355 1
    • AAI clade 5-23 medoid: GCA 016706275 1
    • AAI clade 5-24 medoid: GCA 003554615 1
    • AAI clade 5-25 medoid: GCA 003448875 1
    • AAI clade 5-26 medoid: GCA 017622235 1
    • AAI clade 5-27 medoid: GCA 001919715 1
    • AAI clade 5-28 medoid: GCA 017883385 1
    • AAI clade 5-29 medoid: GCA 001805765 1
    • AAI clade 5-30 medoid: GCF 002251945 1
    • AAI clade 5-31 medoid: GCA 005888435 1
    • AAI clade 5-32 medoid: GCA 003222055 1
    • AAI clade 5-33 medoid: GCA 005889085 1
    • AAI clade 5-34 medoid: GCA 016741895 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1