AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
    • AAI clade 5-1 medoid: GCA 017449415 1
    • AAI clade 5-2 medoid: GCF 000381045 1
    • AAI clade 5-3 medoid: GCF 015206895 1
    • AAI clade 5-4 medoid: GCA 003280985 1
    • AAI clade 5-5 medoid: GCF 900142025 1
    • AAI clade 5-6 medoid: GCF 014205895 1
    • AAI clade 5-7 medoid: GCA 002747175 1
    • AAI clade 5-8 medoid: GCF 002532075 1
    • AAI clade 5-9 medoid: GCA 016179875 1
    • AAI clade 5-10 medoid: GCA 002869845 2
    • AAI clade 5-11 medoid: GCA 016235875 1
    • AAI clade 5-12 medoid: GCA 905612265 1
    • AAI clade 5-13 medoid: GCF 014201315 1
    • AAI clade 5-14 medoid: GCA 003167255 1
    • AAI clade 5-15 medoid: GCA 013152765 1
    • AAI clade 5-16 medoid: GCA 009845545 1
    • AAI clade 5-17 medoid: GCF 003003925 1
    • AAI clade 5-18 medoid: GCA 016182975 1
    • AAI clade 5-19 medoid: GCA 015484715 1
    • AAI clade 5-20 medoid: GCA 017510075 1
    • AAI clade 5-21 medoid: GCA 015222205 1
    • AAI clade 5-22 medoid: GCA 013813355 1
    • AAI clade 5-23 medoid: GCA 016706275 1
    • AAI clade 5-24 medoid: GCA 003554615 1
    • AAI clade 5-25 medoid: GCA 003448875 1
    • AAI clade 5-26 medoid: GCA 017622235 1
    • AAI clade 5-27 medoid: GCA 001919715 1
    • AAI clade 5-28 medoid: GCA 017883385 1
    • AAI clade 5-29 medoid: GCA 001805765 1
      • AAI clade 5-29-1 medoid: GCA 016782495 1
      • AAI clade 5-29-2 medoid: GCA 003142795 1
      • AAI clade 5-29-3 medoid: GCA 016197155 1
      • AAI clade 5-29-4 medoid: GCA 016196555 1
      • AAI clade 5-29-5 medoid: GCA 019052695 1
      • AAI clade 5-29-6 medoid: GCA 016206725 1
      • AAI clade 5-29-7 medoid: GCA 001805845 1
      • AAI clade 5-29-8 medoid: GCA 001805655 1
      • AAI clade 5-29-9 medoid: GCA 001805695 1
      • AAI clade 5-29-10 medoid: GCA 001805765 1
      • AAI clade 5-29-11 medoid: GCA 003141835 1
      • AAI clade 5-29-12 medoid: GCA 018819285 1
      • AAI clade 5-29-13 medoid: GCA 002421805 1
      • AAI clade 5-29-14 medoid: GCA 002085265 1
      • AAI clade 5-29-15 medoid: GCA 011620275 1
      • AAI clade 5-29-16 medoid: GCA 002441245 1
      • AAI clade 5-29-17 medoid: GCA 016208765 1
      • AAI clade 5-29-18 medoid: GCA 016196375 1
        6 datasets: GCA 002787095 1 (AAI: 47.58%), GCA 016177405 1 (AAI: 51.47%), GCA 016196375 1 (AAI: 100.0%), GCA 016196465 1 (AAI: 51.99%), GCA 016201735 1 (AAI: 53.72%), and GCA 016206635 1 (AAI: 46.11%)
      • AAI clade 5-29-19 medoid: GCA 002796125 1
      • AAI clade 5-29-20 medoid: GCA 018826075 1
      • AAI clade 5-29-21 medoid: GCA 003644505 1
      • AAI clade 5-29-22 medoid: GCA 013202745 1
      • AAI clade 5-29-23 medoid: GCA 018901615 1
      • AAI clade 5-29-24 medoid: GCA 016939375 1
      • AAI clade 5-29-25 medoid: GCA 013285965 1
      • AAI clade 5-29-26 medoid: GCA 013626165 1
      • AAI clade 5-29-27 medoid: GCA 013815795 1
      • AAI clade 5-29-28 medoid: GCA 015486615 1
      • AAI clade 5-29-29 medoid: GCA 016177145 1
      • AAI clade 5-29-30 medoid: GCA 016206785 1
      • AAI clade 5-29-31 medoid: GCA 016214265 1
      • AAI clade 5-29-32 medoid: GCA 016213925 1
      • AAI clade 5-29-33 medoid: GCA 016783345 1
      • AAI clade 5-29-34 medoid: GCA 016783745 1
      • AAI clade 5-29-35 medoid: GCA 016928875 1
      • AAI clade 5-29-36 medoid: GCA 016929445 1
      • AAI clade 5-29-37 medoid: GCA 016930485 1
      • AAI clade 5-29-38 medoid: GCA 018823705 1
      • AAI clade 5-29-39 medoid: GCA 018399975 1
    • AAI clade 5-30 medoid: GCF 002251945 1
    • AAI clade 5-31 medoid: GCA 005888435 1
    • AAI clade 5-32 medoid: GCA 003222055 1
    • AAI clade 5-33 medoid: GCA 005889085 1
    • AAI clade 5-34 medoid: GCA 016741895 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1