AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
    • AAI clade 5-1 medoid: GCA 017449415 1
    • AAI clade 5-2 medoid: GCF 000381045 1
    • AAI clade 5-3 medoid: GCF 015206895 1
    • AAI clade 5-4 medoid: GCA 003280985 1
    • AAI clade 5-5 medoid: GCF 900142025 1
    • AAI clade 5-6 medoid: GCF 014205895 1
    • AAI clade 5-7 medoid: GCA 002747175 1
    • AAI clade 5-8 medoid: GCF 002532075 1
    • AAI clade 5-9 medoid: GCA 016179875 1
    • AAI clade 5-10 medoid: GCA 002869845 2
    • AAI clade 5-11 medoid: GCA 016235875 1
    • AAI clade 5-12 medoid: GCA 905612265 1
    • AAI clade 5-13 medoid: GCF 014201315 1
    • AAI clade 5-14 medoid: GCA 003167255 1
    • AAI clade 5-15 medoid: GCA 013152765 1
    • AAI clade 5-16 medoid: GCA 009845545 1
    • AAI clade 5-17 medoid: GCF 003003925 1
    • AAI clade 5-18 medoid: GCA 016182975 1
    • AAI clade 5-19 medoid: GCA 015484715 1
    • AAI clade 5-20 medoid: GCA 017510075 1
    • AAI clade 5-21 medoid: GCA 015222205 1
    • AAI clade 5-22 medoid: GCA 013813355 1
      • AAI clade 5-22-1 medoid: GCA 001464065 1
      • AAI clade 5-22-2 medoid: GCA 001664505 1
      • AAI clade 5-22-3 medoid: GCA 009694745 1
      • AAI clade 5-22-4 medoid: GCA 002279285 1
      • AAI clade 5-22-5 medoid: GCA 016195265 1
      • AAI clade 5-22-6 medoid: GCA 003222675 1
      • AAI clade 5-22-7 medoid: GCA 016190945 1
      • AAI clade 5-22-8 medoid: GCA 009694735 1
      • AAI clade 5-22-9 medoid: GCA 001775755 1
      • AAI clade 5-22-10 medoid: GCA 009840635 1
      • AAI clade 5-22-11 medoid: GCA 002730735 1
      • AAI clade 5-22-12 medoid: GCA 002328835 1
      • AAI clade 5-22-13 medoid: GCA 016867585 1
      • AAI clade 5-22-14 medoid: GCA 016716705 1
      • AAI clade 5-22-15 medoid: GCA 016699405 1
      • AAI clade 5-22-16 medoid: GCA 002731215 1
      • AAI clade 5-22-17 medoid: GCA 003696865 1
      • AAI clade 5-22-18 medoid: GCA 015493585 1
        4 datasets: GCA 003105185 1 (AAI: 52.56%), GCA 013152895 1 (AAI: 70.73%), GCA 013152925 1 (AAI: 57.69%), and GCA 015493585 1 (AAI: 100.0%)
      • AAI clade 5-22-19 medoid: GCA 016716715 1
      • AAI clade 5-22-20 medoid: GCA 016199625 1
      • AAI clade 5-22-21 medoid: GCA 017883185 1
      • AAI clade 5-22-22 medoid: GCA 003223145 1
      • AAI clade 5-22-23 medoid: GCA 003223695 1
      • AAI clade 5-22-24 medoid: GCA 003222385 1
      • AAI clade 5-22-25 medoid: GCA 017883235 1
      • AAI clade 5-22-26 medoid: GCA 003223995 1
      • AAI clade 5-22-27 medoid: GCA 009845425 1
      • AAI clade 5-22-28 medoid: GCA 003650445 1
      • AAI clade 5-22-29 medoid: GCA 017994815 1
      • AAI clade 5-22-30 medoid: GCA 016211085 1
      • AAI clade 5-22-31 medoid: GCA 004356015 1
      • AAI clade 5-22-32 medoid: GCA 004356105 1
      • AAI clade 5-22-33 medoid: GCA 005223145 1
      • AAI clade 5-22-34 medoid: GCA 007376345 1
      • AAI clade 5-22-35 medoid: GCA 011523845 1
      • AAI clade 5-22-36 medoid: GCA 012515115 1
      • AAI clade 5-22-37 medoid: GCA 012517875 1
      • AAI clade 5-22-38 medoid: GCA 016934555 1
      • AAI clade 5-22-39 medoid: GCA 016210935 1
      • AAI clade 5-22-40 medoid: GCA 016195325 1
      • AAI clade 5-22-41 medoid: GCA 016199665 1
      • AAI clade 5-22-42 medoid: GCF 017377855 1
      • AAI clade 5-22-43 medoid: GCA 902826065 1
      • AAI clade 5-22-44 medoid: GCA 903847975 1
      • AAI clade 5-22-45 medoid: GCA 903916735 1
    • AAI clade 5-23 medoid: GCA 016706275 1
    • AAI clade 5-24 medoid: GCA 003554615 1
    • AAI clade 5-25 medoid: GCA 003448875 1
    • AAI clade 5-26 medoid: GCA 017622235 1
    • AAI clade 5-27 medoid: GCA 001919715 1
    • AAI clade 5-28 medoid: GCA 017883385 1
    • AAI clade 5-29 medoid: GCA 001805765 1
    • AAI clade 5-30 medoid: GCF 002251945 1
    • AAI clade 5-31 medoid: GCA 005888435 1
    • AAI clade 5-32 medoid: GCA 003222055 1
    • AAI clade 5-33 medoid: GCA 005889085 1
    • AAI clade 5-34 medoid: GCA 016741895 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1