AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 4-2
medoid: GCF 002245955 1
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AAI clade 4-2-1
medoid: GCF 900177515 1
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AAI clade 4-2-2
medoid: GCF 000948415 1
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AAI clade 4-2-3
medoid: GCF 900093605 1
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AAI clade 4-2-4
medoid: GCF 002105535 1
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AAI clade 4-2-5
medoid: GCF 000312425 1
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AAI clade 4-2-6
medoid: GCA 015232705 1
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AAI clade 4-2-6-1
medoid: GCA 001872725 1
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AAI clade 4-2-6-2
medoid: GCA 015488125 1
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AAI clade 4-2-6-3
medoid: GCF 004217665 1
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AAI clade 4-2-6-4
medoid: GCA 002753185 1
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AAI clade 4-2-6-5
medoid: GCA 015228975 1
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AAI clade 4-2-6-6
medoid: GCA 015232405 1
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AAI clade 4-2-6-7
medoid: GCA 002753615 1
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AAI clade 4-2-6-8
medoid: GCA 015229045 1
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AAI clade 4-2-6-9
medoid: GCA 015232705 1
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AAI clade 4-2-6-9-1
medoid: GCA 015232705 1
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AAI clade 4-2-6-9-1-1
medoid: GCA 015232705 1
8 datasets: GCA 011089965 1 (AAI: 63.48%), GCA 015231295 1 (AAI: 64.66%), GCA 015231775 1 (AAI: 73.1%), GCA 015232245 1 (AAI: 64.02%), GCA 015232395 1 (AAI: 51.7%), GCA 015232705 1 (AAI: 100.0%), GCA 015232825 1 (AAI: 60.17%), and GCA 015234115 1 (AAI: 63.3%)
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AAI clade 4-2-6-9-1-2
medoid: GCA 015233935 1
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AAI clade 4-2-6-9-1-1
medoid: GCA 015232705 1
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AAI clade 4-2-6-9-2
medoid: GCA 015231925 1
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AAI clade 4-2-6-9-1
medoid: GCA 015232705 1
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AAI clade 4-2-6-10
medoid: GCA 015229115 1
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AAI clade 4-2-6-11
medoid: GCA 015233785 1
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AAI clade 4-2-6-12
medoid: GCF 000014865 1
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AAI clade 4-2-6-1
medoid: GCA 001872725 1
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AAI clade 4-2-1
medoid: GCF 900177515 1
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AAI clade 4-3
medoid: GCF 900094625 1
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AAI clade 4-4
medoid: GCA 009773055 1
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AAI clade 4-5
medoid: GCF 900094605 1
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AAI clade 4-6
medoid: GCF 004302915 1
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AAI clade 4-7
medoid: GCF 018919395 1
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AAI clade 4-8
medoid: GCA 902528415 1
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AAI clade 4-9
medoid: GCF 004152845 1
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AAI clade 4-10
medoid: GCF 002858865 1
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AAI clade 4-11
medoid: GCF 014204545 1
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AAI clade 4-12
medoid: GCF 013035315 1
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AAI clade 4-13
medoid: GCF 008932435 1
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AAI clade 4-14
medoid: GCF 000262405 1
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AAI clade 4-15
medoid: GCA 902595525 1
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AAI clade 4-16
medoid: GCF 009696265 1
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AAI clade 4-17
medoid: GCA 902793695 1
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AAI clade 4-18
medoid: GCF 002215495 1
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AAI clade 4-19
medoid: GCF 013170705 1
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AAI clade 4-20
medoid: GCA 005503215 1
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AAI clade 4-21
medoid: GCF 014358075 1
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AAI clade 4-22
medoid: GCF 000743575 1
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AAI clade 4-23
medoid: GCA 015062495 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1