AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
    • AAI clade 4-1 medoid: GCF 017302985 1
    • AAI clade 4-2 medoid: GCF 002245955 1
      • AAI clade 4-2-1 medoid: GCF 900177515 1
      • AAI clade 4-2-2 medoid: GCF 000948415 1
      • AAI clade 4-2-3 medoid: GCF 900093605 1
      • AAI clade 4-2-4 medoid: GCF 002105535 1
        • AAI clade 4-2-4-1 medoid: GCA 900768875 1
        • AAI clade 4-2-4-2 medoid: GCF 001511835 1
        • AAI clade 4-2-4-3 medoid: GCF 000513295 1
        • AAI clade 4-2-4-4 medoid: GCA 001603335 1
        • AAI clade 4-2-4-5 medoid: GCA 017640505 1
        • AAI clade 4-2-4-6 medoid: GCF 002845745 1
        • AAI clade 4-2-4-7 medoid: GCA 018649725 1
        • AAI clade 4-2-4-8 medoid: GCA 902777205 1
          8 datasets: GCA 002439085 1 (AAI: 94.85%), GCA 002440235 1 (AAI: 75.31%), GCA 017480385 1 (AAI: 70.35%), GCA 017539865 1 (AAI: 66.68%), GCA 017616015 1 (AAI: 69.67%), GCA 900768185 1 (AAI: 76.67%), GCA 900768845 1 (AAI: 61.23%), and GCA 902777205 1 (AAI: 100.0%)
        • AAI clade 4-2-4-9 medoid: GCA 017467335 1
        • AAI clade 4-2-4-10 medoid: GCA 018666155 1
        • AAI clade 4-2-4-11 medoid: GCF 009601025 1
        • AAI clade 4-2-4-12 medoid: GCA 902725215 1
        • AAI clade 4-2-4-13 medoid: GCF 000815465 1
        • AAI clade 4-2-4-14 medoid: GCF 000215485 1
      • AAI clade 4-2-5 medoid: GCF 000312425 1
      • AAI clade 4-2-6 medoid: GCA 015232705 1
    • AAI clade 4-3 medoid: GCF 900094625 1
    • AAI clade 4-4 medoid: GCA 009773055 1
    • AAI clade 4-5 medoid: GCF 900094605 1
    • AAI clade 4-6 medoid: GCF 004302915 1
    • AAI clade 4-7 medoid: GCF 018919395 1
    • AAI clade 4-8 medoid: GCA 902528415 1
    • AAI clade 4-9 medoid: GCF 004152845 1
    • AAI clade 4-10 medoid: GCF 002858865 1
    • AAI clade 4-11 medoid: GCF 014204545 1
    • AAI clade 4-12 medoid: GCF 013035315 1
    • AAI clade 4-13 medoid: GCF 008932435 1
    • AAI clade 4-14 medoid: GCF 000262405 1
    • AAI clade 4-15 medoid: GCA 902595525 1
    • AAI clade 4-16 medoid: GCF 009696265 1
    • AAI clade 4-17 medoid: GCA 902793695 1
    • AAI clade 4-18 medoid: GCF 002215495 1
    • AAI clade 4-19 medoid: GCF 013170705 1
    • AAI clade 4-20 medoid: GCA 005503215 1
    • AAI clade 4-21 medoid: GCF 014358075 1
    • AAI clade 4-22 medoid: GCF 000743575 1
    • AAI clade 4-23 medoid: GCA 015062495 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1