AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 4-2
medoid: GCF 002245955 1
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AAI clade 4-3
medoid: GCF 900094625 1
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AAI clade 4-4
medoid: GCA 009773055 1
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AAI clade 4-5
medoid: GCF 900094605 1
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AAI clade 4-6
medoid: GCF 004302915 1
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AAI clade 4-7
medoid: GCF 018919395 1
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AAI clade 4-8
medoid: GCA 902528415 1
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AAI clade 4-9
medoid: GCF 004152845 1
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AAI clade 4-10
medoid: GCF 002858865 1
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AAI clade 4-11
medoid: GCF 014204545 1
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AAI clade 4-12
medoid: GCF 013035315 1
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AAI clade 4-13
medoid: GCF 008932435 1
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AAI clade 4-14
medoid: GCF 000262405 1
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AAI clade 4-14-1
medoid: GCF 005871085 1
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AAI clade 4-14-2
medoid: GCA 000378025 1
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AAI clade 4-14-3
medoid: GCF 014191055 1
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AAI clade 4-14-4
medoid: GCF 000253295 1
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AAI clade 4-14-5
medoid: GCF 900113835 1
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AAI clade 4-14-6
medoid: GCF 011764485 1
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AAI clade 4-14-7
medoid: GCF 000746085 1
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AAI clade 4-14-8
medoid: GCA 013697055 1
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AAI clade 4-14-9
medoid: GCA 902613795 1
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AAI clade 4-14-10
medoid: GCF 900112625 1
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AAI clade 4-14-10-1
medoid: GCA 002778835 1
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AAI clade 4-14-10-2
medoid: GCF 900112625 1
8 datasets: GCA 003096615 1 (AAI: 95.21%), GCF 000364445 2 (AAI: 86.05%), GCF 009806555 1 (AAI: 86.04%), GCF 014138435 1 (AAI: 92.15%), GCF 017833295 1 (AAI: 87.21%), GCF 900103195 1 (AAI: 89.31%), GCF 900103445 1 (AAI: 84.9%), and GCF 900112625 1 (AAI: 100.0%)
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AAI clade 4-14-10-3
medoid: GCF 003697185 1
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AAI clade 4-14-10-4
medoid: GCF 004348265 1
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AAI clade 4-14-10-5
medoid: GCF 003173735 1
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AAI clade 4-14-10-6
medoid: GCF 008039875 1
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AAI clade 4-14-10-7
medoid: GCF 902141845 1
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AAI clade 4-14-10-1
medoid: GCA 002778835 1
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AAI clade 4-14-11
medoid: GCF 015709525 1
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AAI clade 4-14-12
medoid: GCF 902506165 1
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AAI clade 4-14-13
medoid: GCF 016595235 1
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AAI clade 4-14-14
medoid: GCF 014199985 1
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AAI clade 4-14-15
medoid: GCF 001043955 1
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AAI clade 4-14-16
medoid: GCF 001423085 1
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AAI clade 4-14-17
medoid: GCF 000745215 1
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AAI clade 4-14-1
medoid: GCF 005871085 1
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AAI clade 4-15
medoid: GCA 902595525 1
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AAI clade 4-16
medoid: GCF 009696265 1
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AAI clade 4-17
medoid: GCA 902793695 1
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AAI clade 4-18
medoid: GCF 002215495 1
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AAI clade 4-19
medoid: GCF 013170705 1
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AAI clade 4-20
medoid: GCA 005503215 1
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AAI clade 4-21
medoid: GCF 014358075 1
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AAI clade 4-22
medoid: GCF 000743575 1
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AAI clade 4-23
medoid: GCA 015062495 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1