AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 4-2
medoid: GCF 002245955 1
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AAI clade 4-3
medoid: GCF 900094625 1
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AAI clade 4-4
medoid: GCA 009773055 1
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AAI clade 4-5
medoid: GCF 900094605 1
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AAI clade 4-6
medoid: GCF 004302915 1
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AAI clade 4-7
medoid: GCF 018919395 1
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AAI clade 4-8
medoid: GCA 902528415 1
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AAI clade 4-9
medoid: GCF 004152845 1
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AAI clade 4-10
medoid: GCF 002858865 1
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AAI clade 4-11
medoid: GCF 014204545 1
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AAI clade 4-12
medoid: GCF 013035315 1
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AAI clade 4-13
medoid: GCF 008932435 1
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AAI clade 4-13-1
medoid: GCA 003331985 1
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AAI clade 4-13-2
medoid: GCA 000509225 1
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AAI clade 4-13-3
medoid: GCF 000168975 1
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AAI clade 4-13-4
medoid: GCF 008932295 1
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AAI clade 4-13-5
medoid: GCF 000828475 1
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AAI clade 4-13-6
medoid: GCA 902624095 1
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AAI clade 4-13-7
medoid: GCA 002706335 1
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AAI clade 4-13-8
medoid: GCF 014196845 1
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AAI clade 4-13-9
medoid: GCF 009789575 1
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AAI clade 4-13-10
medoid: GCF 900115225 1
8 datasets: GCA 002746425 1 (AAI: 51.3%), GCA 016764535 1 (AAI: 52.99%), GCF 002866925 1 (AAI: 65.94%), GCF 003324485 1 (AAI: 68.39%), GCF 003574655 1 (AAI: 76.08%), GCF 900115225 1 (AAI: 100.0%), GCF 900215505 1 (AAI: 67.91%), and GCF 900215605 1 (AAI: 65.39%)
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AAI clade 4-13-11
medoid: GCA 013214695 1
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AAI clade 4-13-12
medoid: GCF 016102285 1
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AAI clade 4-13-13
medoid: GCF 003606325 2
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AAI clade 4-13-14
medoid: GCF 009712425 2
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AAI clade 4-13-15
medoid: GCF 900114245 1
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AAI clade 4-13-16
medoid: GCF 002770725 1
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AAI clade 4-13-17
medoid: GCF 016629525 1
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AAI clade 4-13-18
medoid: GCA 900470285 1
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AAI clade 4-13-19
medoid: GCA 900539805 1
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AAI clade 4-13-20
medoid: GCF 000636015 1
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AAI clade 4-13-21
medoid: GCF 002022415 1
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AAI clade 4-13-22
medoid: GCF 003583935 1
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AAI clade 4-13-23
medoid: GCF 002252505 1
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AAI clade 4-13-1
medoid: GCA 003331985 1
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AAI clade 4-14
medoid: GCF 000262405 1
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AAI clade 4-15
medoid: GCA 902595525 1
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AAI clade 4-16
medoid: GCF 009696265 1
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AAI clade 4-17
medoid: GCA 902793695 1
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AAI clade 4-18
medoid: GCF 002215495 1
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AAI clade 4-19
medoid: GCF 013170705 1
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AAI clade 4-20
medoid: GCA 005503215 1
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AAI clade 4-21
medoid: GCF 014358075 1
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AAI clade 4-22
medoid: GCF 000743575 1
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AAI clade 4-23
medoid: GCA 015062495 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1