AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
    • AAI clade 4-1 medoid: GCF 017302985 1
    • AAI clade 4-2 medoid: GCF 002245955 1
    • AAI clade 4-3 medoid: GCF 900094625 1
    • AAI clade 4-4 medoid: GCA 009773055 1
    • AAI clade 4-5 medoid: GCF 900094605 1
    • AAI clade 4-6 medoid: GCF 004302915 1
    • AAI clade 4-7 medoid: GCF 018919395 1
    • AAI clade 4-8 medoid: GCA 902528415 1
    • AAI clade 4-9 medoid: GCF 004152845 1
    • AAI clade 4-10 medoid: GCF 002858865 1
    • AAI clade 4-11 medoid: GCF 014204545 1
    • AAI clade 4-12 medoid: GCF 013035315 1
      • AAI clade 4-12-1 medoid: GCF 013035315 1
      • AAI clade 4-12-2 medoid: GCF 002860325 1
      • AAI clade 4-12-3 medoid: GCF 000813965 1
      • AAI clade 4-12-4 medoid: GCF 000738435 1
      • AAI clade 4-12-5 medoid: GCF 004343075 1
      • AAI clade 4-12-6 medoid: GCF 000768555 3
      • AAI clade 4-12-7 medoid: GCF 900156505 1
      • AAI clade 4-12-8 medoid: GCF 900113435 1
        • AAI clade 4-12-8-1 medoid: GCA 018647275 1
        • AAI clade 4-12-8-2 medoid: GCF 003611275 1
        • AAI clade 4-12-8-3 medoid: GCA 002731875 1
        • AAI clade 4-12-8-4 medoid: GCF 003335585 1
        • AAI clade 4-12-8-5 medoid: GCA 013139555 1
        • AAI clade 4-12-8-6 medoid: GCF 000622385 1
        • AAI clade 4-12-8-7 medoid: GCA 905480645 1
        • AAI clade 4-12-8-8 medoid: GCF 000014045 1
        • AAI clade 4-12-8-9 medoid: GCF 000620505 1
        • AAI clade 4-12-8-10 medoid: GCF 014196805 1
        • AAI clade 4-12-8-11 medoid: GCF 001634885 1
        • AAI clade 4-12-8-12 medoid: GCF 002751875 1
        • AAI clade 4-12-8-13 medoid: GCF 016801775 1
        • AAI clade 4-12-8-14 medoid: GCF 003352045 1
        • AAI clade 4-12-8-15 medoid: GCF 003352085 1
        • AAI clade 4-12-8-16 medoid: GCF 015644665 1
          5 datasets: GCF 005887615 1 (AAI: 68.46%), GCF 009811755 1 (AAI: 77.09%), GCF 012932215 1 (AAI: 72.3%), GCF 014337925 1 (AAI: 71.78%), and GCF 015644665 1 (AAI: 100.0%)
        • AAI clade 4-12-8-17 medoid: GCF 900103185 1
        • AAI clade 4-12-8-18 medoid: GCF 018200035 1
        • AAI clade 4-12-8-19 medoid: GCF 900143535 1
        • AAI clade 4-12-8-20 medoid: GCF 900302465 1
      • AAI clade 4-12-9 medoid: GCF 003111685 1
      • AAI clade 4-12-10 medoid: GCA 007134865 1
    • AAI clade 4-13 medoid: GCF 008932435 1
    • AAI clade 4-14 medoid: GCF 000262405 1
    • AAI clade 4-15 medoid: GCA 902595525 1
    • AAI clade 4-16 medoid: GCF 009696265 1
    • AAI clade 4-17 medoid: GCA 902793695 1
    • AAI clade 4-18 medoid: GCF 002215495 1
    • AAI clade 4-19 medoid: GCF 013170705 1
    • AAI clade 4-20 medoid: GCA 005503215 1
    • AAI clade 4-21 medoid: GCF 014358075 1
    • AAI clade 4-22 medoid: GCF 000743575 1
    • AAI clade 4-23 medoid: GCA 015062495 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1