AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 4-2
medoid: GCF 002245955 1
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AAI clade 4-3
medoid: GCF 900094625 1
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AAI clade 4-4
medoid: GCA 009773055 1
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AAI clade 4-5
medoid: GCF 900094605 1
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AAI clade 4-6
medoid: GCF 004302915 1
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AAI clade 4-7
medoid: GCF 018919395 1
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AAI clade 4-8
medoid: GCA 902528415 1
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AAI clade 4-9
medoid: GCF 004152845 1
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AAI clade 4-10
medoid: GCF 002858865 1
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AAI clade 4-10-1
medoid: GCF 002858865 1
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AAI clade 4-10-2
medoid: GCA 017991675 1
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AAI clade 4-10-2-1
medoid: GCA 017991675 1
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AAI clade 4-10-2-2
medoid: GCA 001824475 1
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AAI clade 4-10-2-2-1
medoid: GCA 001824475 1
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AAI clade 4-10-2-2-2
medoid: GCA 004799395 1
8 datasets: GCA 003136395 1 (AAI: 71.69%), GCA 004799395 1 (AAI: 100.0%), GCA 004799515 1 (AAI: 72.18%), GCA 004799545 1 (AAI: 60.78%), GCA 018241625 1 (AAI: 67.19%), GCA 903822175 1 (AAI: 74.24%), GCA 903860975 1 (AAI: 72.3%), and GCF 003254505 1 (AAI: 66.25%)
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AAI clade 4-10-2-2-1
medoid: GCA 001824475 1
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AAI clade 4-10-2-1
medoid: GCA 017991675 1
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AAI clade 4-10-3
medoid: GCA 018222605 1
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AAI clade 4-10-4
medoid: GCA 001464425 1
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AAI clade 4-10-5
medoid: GCF 000685315 1
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AAI clade 4-10-6
medoid: GCF 016817355 1
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AAI clade 4-10-7
medoid: GCF 003576245 1
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AAI clade 4-10-8
medoid: GCF 000420665 1
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AAI clade 4-10-9
medoid: GCF 000495795 1
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AAI clade 4-10-1
medoid: GCF 002858865 1
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AAI clade 4-11
medoid: GCF 014204545 1
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AAI clade 4-12
medoid: GCF 013035315 1
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AAI clade 4-13
medoid: GCF 008932435 1
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AAI clade 4-14
medoid: GCF 000262405 1
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AAI clade 4-15
medoid: GCA 902595525 1
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AAI clade 4-16
medoid: GCF 009696265 1
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AAI clade 4-17
medoid: GCA 902793695 1
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AAI clade 4-18
medoid: GCF 002215495 1
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AAI clade 4-19
medoid: GCF 013170705 1
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AAI clade 4-20
medoid: GCA 005503215 1
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AAI clade 4-21
medoid: GCF 014358075 1
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AAI clade 4-22
medoid: GCF 000743575 1
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AAI clade 4-23
medoid: GCA 015062495 1
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AAI clade 4-1
medoid: GCF 017302985 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1