AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 3-2
medoid: GCF 000308435 1
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AAI clade 3-3
medoid: GCF 002155905 1
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AAI clade 3-4
medoid: GCF 012317045 1
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AAI clade 3-5
medoid: GCF 003725545 1
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AAI clade 3-6
medoid: GCF 001836165 1
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AAI clade 3-7
medoid: GCF 000342005 1
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AAI clade 3-8
medoid: GCF 000014565 1
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AAI clade 3-9
medoid: GCF 018224615 1
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AAI clade 3-9-1
medoid: GCF 002848265 1
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AAI clade 3-9-2
medoid: GCA 017305435 1
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AAI clade 3-9-3
medoid: GCF 001878835 1
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AAI clade 3-9-4
medoid: GCA 001898325 1
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AAI clade 3-9-5
medoid: GCA 017306305 1
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AAI clade 3-9-5-1
medoid: GCF 000956505 1
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AAI clade 3-9-5-2
medoid: GCF 000956545 1
5 datasets: GCA 017306305 1 (AAI: 86.96%), GCA 018268435 1 (AAI: 84.29%), GCA 018268455 1 (AAI: 81.24%), GCF 000956545 1 (AAI: 100.0%), and GCF 902506375 1 (AAI: 86.71%)
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AAI clade 3-9-5-3
medoid: GCF 001552355 1
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AAI clade 3-9-5-4
medoid: GCF 013409745 1
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AAI clade 3-9-5-1
medoid: GCF 000956505 1
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AAI clade 3-9-6
medoid: GCA 002703245 1
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AAI clade 3-9-7
medoid: GCA 003248605 1
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AAI clade 3-9-8
medoid: GCF 000411455 1
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AAI clade 3-9-9
medoid: GCF 002812805 1
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AAI clade 3-9-10
medoid: GCF 014635185 1
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AAI clade 3-9-11
medoid: GCA 008868125 1
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AAI clade 3-9-12
medoid: GCA 011620665 1
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AAI clade 3-9-13
medoid: GCF 900114345 1
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AAI clade 3-9-14
medoid: GCA 900078385 1
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AAI clade 3-9-15
medoid: GCA 015654575 1
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AAI clade 3-9-16
medoid: GCF 001984105 1
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AAI clade 3-9-17
medoid: GCF 011046485 1
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AAI clade 3-9-18
medoid: GCF 011752045 1
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AAI clade 3-9-19
medoid: GCA 017968845 1
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AAI clade 3-9-20
medoid: GCA 018895315 1
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AAI clade 3-9-21
medoid: GCA 019117025 1
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AAI clade 3-9-22
medoid: GCF 000202635 1
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AAI clade 3-9-23
medoid: GCF 015277855 1
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AAI clade 3-9-24
medoid: GCF 900102005 1
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AAI clade 3-9-25
medoid: GCF 000422385 1
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AAI clade 3-9-26
medoid: GCF 000422405 1
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AAI clade 3-9-27
medoid: GCF 000826185 2
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AAI clade 3-9-28
medoid: GCF 000956465 1
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AAI clade 3-9-29
medoid: GCF 003075395 1
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AAI clade 3-9-30
medoid: GCF 001423485 1
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AAI clade 3-9-31
medoid: GCF 002362255 1
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AAI clade 3-9-32
medoid: GCF 900104345 1
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AAI clade 3-9-33
medoid: GCF 016805985 1
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AAI clade 3-9-34
medoid: GCF 014837165 1
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AAI clade 3-9-35
medoid: GCF 002245215 1
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AAI clade 3-9-36
medoid: GCF 003569805 1
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AAI clade 3-9-37
medoid: GCF 003095395 1
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AAI clade 3-9-38
medoid: GCF 003254645 1
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AAI clade 3-9-39
medoid: GCF 014646015 1
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AAI clade 3-9-40
medoid: GCF 009758255 1
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AAI clade 3-9-41
medoid: GCF 003850245 1
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AAI clade 3-9-42
medoid: GCF 004564355 1
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AAI clade 3-9-43
medoid: GCF 008727755 1
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AAI clade 3-9-44
medoid: GCF 007988825 1
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AAI clade 3-9-45
medoid: GCF 008017445 1
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AAI clade 3-9-46
medoid: GCF 011046975 1
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AAI clade 3-9-47
medoid: GCF 011047135 1
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AAI clade 3-9-1
medoid: GCF 002848265 1
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AAI clade 3-10
medoid: GCF 001667735 1
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AAI clade 3-11
medoid: GCF 006539945 1
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AAI clade 3-12
medoid: GCF 018613675 1
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AAI clade 3-13
medoid: GCF 001942045 1
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AAI clade 3-14
medoid: GCF 900323885 1
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AAI clade 3-15
medoid: GCA 018375675 1
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AAI clade 3-16
medoid: GCA 013911515 1
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AAI clade 3-17
medoid: GCA 902611225 1
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AAI clade 3-18
medoid: GCF 002288185 1
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AAI clade 3-19
medoid: GCA 902576605 1
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AAI clade 3-20
medoid: GCF 014191495 1
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AAI clade 3-21
medoid: GCF 900143215 1
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AAI clade 3-22
medoid: GCF 014646815 1
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AAI clade 3-23
medoid: GCA 900770865 1
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AAI clade 3-24
medoid: GCF 014805525 1
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AAI clade 3-25
medoid: GCA 003158855 1
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AAI clade 3-26
medoid: GCA 013813955 1
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AAI clade 3-27
medoid: GCF 000092985 1
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AAI clade 3-28
medoid: GCF 008327685 1
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AAI clade 3-29
medoid: GCF 001007995 1
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AAI clade 3-30
medoid: GCF 001806325 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1