AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 3-2
medoid: GCF 000308435 1
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AAI clade 3-3
medoid: GCF 002155905 1
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AAI clade 3-4
medoid: GCF 012317045 1
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AAI clade 3-5
medoid: GCF 003725545 1
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AAI clade 3-6
medoid: GCF 001836165 1
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AAI clade 3-7
medoid: GCF 000342005 1
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AAI clade 3-8
medoid: GCF 000014565 1
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AAI clade 3-8-1
medoid: GCF 002095435 2
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AAI clade 3-8-2
medoid: GCF 014145145 1
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AAI clade 3-8-3
medoid: GCF 016598535 1
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AAI clade 3-8-4
medoid: GCF 900187265 1
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AAI clade 3-8-5
medoid: GCF 009932435 1
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AAI clade 3-8-6
medoid: GCF 000248055 1
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AAI clade 3-8-7
medoid: GCF 014673215 1
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AAI clade 3-8-8
medoid: GCA 018376445 1
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AAI clade 3-8-9
medoid: GCF 000014565 1
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AAI clade 3-8-10
medoid: GCF 000192435 1
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AAI clade 3-8-11
medoid: GCF 000225505 1
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AAI clade 3-8-12
medoid: GCA 016462415 1
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AAI clade 3-8-13
medoid: GCF 004011865 1
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AAI clade 3-8-14
medoid: GCF 007858475 1
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AAI clade 3-8-15
medoid: GCF 000214175 1
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AAI clade 3-8-16
medoid: GCF 000241325 1
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AAI clade 3-8-17
medoid: GCF 000954115 1
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AAI clade 3-8-18
medoid: GCF 001894865 1
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AAI clade 3-8-18-1
medoid: GCF 001894865 1
7 datasets: GCF 000341795 1 (AAI: 73.02%), GCF 001040705 1 (AAI: 73.32%), GCF 001894865 1 (AAI: 100.0%), GCF 001894985 1 (AAI: 75.0%), GCF 004006015 1 (AAI: 59.08%), GCF 005049235 1 (AAI: 93.41%), and GCF 006704125 1 (AAI: 78.16%)
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AAI clade 3-8-18-2
medoid: GCF 003860405 1
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AAI clade 3-8-18-3
medoid: GCF 016482825 1
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AAI clade 3-8-18-1
medoid: GCF 001894865 1
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AAI clade 3-8-19
medoid: GCF 000344135 1
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AAI clade 3-8-20
medoid: GCF 016599145 1
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AAI clade 3-8-21
medoid: GCF 001894765 1
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AAI clade 3-8-22
medoid: GCF 002259415 1
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AAI clade 3-8-23
medoid: GCF 014281965 1
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AAI clade 3-8-1
medoid: GCF 002095435 2
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AAI clade 3-9
medoid: GCF 018224615 1
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AAI clade 3-10
medoid: GCF 001667735 1
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AAI clade 3-11
medoid: GCF 006539945 1
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AAI clade 3-12
medoid: GCF 018613675 1
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AAI clade 3-13
medoid: GCF 001942045 1
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AAI clade 3-14
medoid: GCF 900323885 1
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AAI clade 3-15
medoid: GCA 018375675 1
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AAI clade 3-16
medoid: GCA 013911515 1
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AAI clade 3-17
medoid: GCA 902611225 1
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AAI clade 3-18
medoid: GCF 002288185 1
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AAI clade 3-19
medoid: GCA 902576605 1
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AAI clade 3-20
medoid: GCF 014191495 1
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AAI clade 3-21
medoid: GCF 900143215 1
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AAI clade 3-22
medoid: GCF 014646815 1
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AAI clade 3-23
medoid: GCA 900770865 1
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AAI clade 3-24
medoid: GCF 014805525 1
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AAI clade 3-25
medoid: GCA 003158855 1
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AAI clade 3-26
medoid: GCA 013813955 1
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AAI clade 3-27
medoid: GCF 000092985 1
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AAI clade 3-28
medoid: GCF 008327685 1
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AAI clade 3-29
medoid: GCF 001007995 1
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AAI clade 3-30
medoid: GCF 001806325 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1