AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 3-2
medoid: GCF 000308435 1
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AAI clade 3-3
medoid: GCF 002155905 1
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AAI clade 3-4
medoid: GCF 012317045 1
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AAI clade 3-5
medoid: GCF 003725545 1
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AAI clade 3-6
medoid: GCF 001836165 1
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AAI clade 3-7
medoid: GCF 000342005 1
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AAI clade 3-8
medoid: GCF 000014565 1
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AAI clade 3-9
medoid: GCF 018224615 1
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AAI clade 3-10
medoid: GCF 001667735 1
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AAI clade 3-11
medoid: GCF 006539945 1
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AAI clade 3-12
medoid: GCF 018613675 1
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AAI clade 3-13
medoid: GCF 001942045 1
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AAI clade 3-14
medoid: GCF 900323885 1
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AAI clade 3-15
medoid: GCA 018375675 1
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AAI clade 3-16
medoid: GCA 013911515 1
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AAI clade 3-17
medoid: GCA 902611225 1
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AAI clade 3-18
medoid: GCF 002288185 1
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AAI clade 3-19
medoid: GCA 902576605 1
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AAI clade 3-20
medoid: GCF 014191495 1
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AAI clade 3-21
medoid: GCF 900143215 1
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AAI clade 3-22
medoid: GCF 014646815 1
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AAI clade 3-23
medoid: GCA 900770865 1
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AAI clade 3-24
medoid: GCF 014805525 1
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AAI clade 3-25
medoid: GCA 003158855 1
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AAI clade 3-25-1
medoid: GCA 003158855 1
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AAI clade 3-25-1-1
medoid: GCA 017882985 1
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AAI clade 3-25-1-2
medoid: GCA 002255315 1
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AAI clade 3-25-1-3
medoid: GCA 002255565 1
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AAI clade 3-25-1-4
medoid: GCA 003134515 1
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AAI clade 3-25-1-5
medoid: GCA 003158855 1
7 datasets: GCA 003132165 1 (AAI: 71.78%), GCA 003132205 1 (AAI: 86.91%), GCA 003138815 1 (AAI: 65.45%), GCA 003141095 1 (AAI: 75.48%), GCA 003158855 1 (AAI: 100.0%), GCA 013044405 1 (AAI: 65.46%), and GCA 017883045 1 (AAI: 67.28%)
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AAI clade 3-25-1-6
medoid: GCA 003162475 1
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AAI clade 3-25-1-7
medoid: GCA 003160115 1
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AAI clade 3-25-1-8
medoid: GCA 003136495 1
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AAI clade 3-25-1-9
medoid: GCA 013044265 1
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AAI clade 3-25-1-10
medoid: GCA 003138895 1
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AAI clade 3-25-1-11
medoid: GCA 003151555 1
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AAI clade 3-25-1-12
medoid: GCA 003162395 1
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AAI clade 3-25-1-13
medoid: GCA 003163875 1
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AAI clade 3-25-1-14
medoid: GCA 009701115 1
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AAI clade 3-25-1-15
medoid: GCA 009785095 1
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AAI clade 3-25-1-16
medoid: GCA 018971385 1
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AAI clade 3-25-1-17
medoid: GCA 018970215 1
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AAI clade 3-25-1-18
medoid: GCA 903830655 1
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AAI clade 3-25-1-19
medoid: GCA 903828785 1
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AAI clade 3-25-1-20
medoid: GCA 903826715 1
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AAI clade 3-25-1-21
medoid: GCA 903848885 1
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AAI clade 3-25-1-22
medoid: GCA 903860915 1
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AAI clade 3-25-1-23
medoid: GCA 903873775 1
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AAI clade 3-25-1-24
medoid: GCA 903885505 1
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AAI clade 3-25-1-1
medoid: GCA 017882985 1
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AAI clade 3-25-2
medoid: GCA 003169675 1
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AAI clade 3-25-3
medoid: GCA 003167415 1
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AAI clade 3-25-4
medoid: GCA 903874965 1
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AAI clade 3-25-1
medoid: GCA 003158855 1
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AAI clade 3-26
medoid: GCA 013813955 1
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AAI clade 3-27
medoid: GCF 000092985 1
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AAI clade 3-28
medoid: GCF 008327685 1
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AAI clade 3-29
medoid: GCF 001007995 1
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AAI clade 3-30
medoid: GCF 001806325 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1