AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 3-2
medoid: GCF 000308435 1
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AAI clade 3-3
medoid: GCF 002155905 1
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AAI clade 3-4
medoid: GCF 012317045 1
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AAI clade 3-5
medoid: GCF 003725545 1
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AAI clade 3-6
medoid: GCF 001836165 1
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AAI clade 3-7
medoid: GCF 000342005 1
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AAI clade 3-8
medoid: GCF 000014565 1
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AAI clade 3-9
medoid: GCF 018224615 1
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AAI clade 3-10
medoid: GCF 001667735 1
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AAI clade 3-10-1
medoid: GCF 001672755 1
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AAI clade 3-10-2
medoid: GCF 002101735 1
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AAI clade 3-10-3
medoid: GCF 900157385 1
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AAI clade 3-10-4
medoid: GCF 900232995 1
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AAI clade 3-10-5
medoid: GCF 001417955 2
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AAI clade 3-10-6
medoid: GCF 001667885 1
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AAI clade 3-10-7
medoid: GCF 001672815 1
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AAI clade 3-10-8
medoid: GCF 000689255 1
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AAI clade 3-10-9
medoid: GCF 000157895 3
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AAI clade 3-10-10
medoid: GCF 000340435 2
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AAI clade 3-10-11
medoid: GCF 001673635 1
7 datasets: GCF 000613245 1 (AAI: 95.28%), GCF 001668675 1 (AAI: 95.58%), GCF 001673155 1 (AAI: 73.57%), GCF 001673315 1 (AAI: 80.9%), GCF 001673365 1 (AAI: 76.91%), GCF 001673635 1 (AAI: 100.0%), and GCF 015689175 1 (AAI: 72.81%)
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AAI clade 3-10-12
medoid: GCF 001665395 1
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AAI clade 3-10-13
medoid: GCF 002086455 1
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AAI clade 3-10-14
medoid: GCF 002102395 1
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AAI clade 3-10-15
medoid: GCF 001954195 1
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AAI clade 3-10-16
medoid: GCF 002086275 1
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AAI clade 3-10-17
medoid: GCF 009936235 1
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AAI clade 3-10-1
medoid: GCF 001672755 1
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AAI clade 3-11
medoid: GCF 006539945 1
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AAI clade 3-12
medoid: GCF 018613675 1
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AAI clade 3-13
medoid: GCF 001942045 1
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AAI clade 3-14
medoid: GCF 900323885 1
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AAI clade 3-15
medoid: GCA 018375675 1
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AAI clade 3-16
medoid: GCA 013911515 1
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AAI clade 3-17
medoid: GCA 902611225 1
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AAI clade 3-18
medoid: GCF 002288185 1
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AAI clade 3-19
medoid: GCA 902576605 1
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AAI clade 3-20
medoid: GCF 014191495 1
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AAI clade 3-21
medoid: GCF 900143215 1
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AAI clade 3-22
medoid: GCF 014646815 1
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AAI clade 3-23
medoid: GCA 900770865 1
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AAI clade 3-24
medoid: GCF 014805525 1
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AAI clade 3-25
medoid: GCA 003158855 1
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AAI clade 3-26
medoid: GCA 013813955 1
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AAI clade 3-27
medoid: GCF 000092985 1
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AAI clade 3-28
medoid: GCF 008327685 1
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AAI clade 3-29
medoid: GCF 001007995 1
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AAI clade 3-30
medoid: GCF 001806325 1
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AAI clade 3-1
medoid: GCF 014451325 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1