AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 22-1
medoid: GCA 017466725 1
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AAI clade 22-2
medoid: GCA 900767835 1
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AAI clade 22-3
medoid: GCA 905235475 1
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AAI clade 22-4
medoid: GCA 900545735 1
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AAI clade 22-5
medoid: GCA 900766395 1
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AAI clade 22-6
medoid: GCA 017398655 1
8 datasets: GCA 002438625 1 (AAI: 45.2%), GCA 002500135 1 (AAI: 56.68%), GCA 009929275 1 (AAI: 54.39%), GCA 017398655 1 (AAI: 100.0%), GCA 017403205 1 (AAI: 58.47%), GCA 017523305 1 (AAI: 70.08%), GCA 905236445 1 (AAI: 45.3%), and GCA 910584815 1 (AAI: 61.99%)
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AAI clade 22-7
medoid: GCA 017442645 1
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AAI clade 22-8
medoid: GCA 003453435 1
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AAI clade 22-9
medoid: GCA 018384735 1
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AAI clade 22-10
medoid: GCA 012031925 1
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AAI clade 22-11
medoid: GCA 905195085 1
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AAI clade 22-12
medoid: GCA 902788085 1
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AAI clade 22-13
medoid: GCA 900556355 1
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AAI clade 22-14
medoid: GCF 000277795 1
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AAI clade 22-1
medoid: GCA 017466725 1
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AAI clade 23
medoid: GCA 002436405 1