AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 2-1
medoid: GCF 014770435 1
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AAI clade 2-2
medoid: GCF 000765825 2
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AAI clade 2-3
medoid: GCA 003028315 1
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AAI clade 2-4
medoid: GCF 900636545 1
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AAI clade 2-5
medoid: GCF 009831415 1
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AAI clade 2-6
medoid: GCF 016599715 1
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AAI clade 2-7
medoid: GCF 009176645 1
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AAI clade 2-8
medoid: GCF 002221525 1
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AAI clade 2-9
medoid: GCF 000210895 1
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AAI clade 2-10
medoid: GCA 003250495 1
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AAI clade 2-11
medoid: GCF 005497185 1
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AAI clade 2-12
medoid: GCF 001579805 1
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AAI clade 2-13
medoid: GCF 003048405 1
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AAI clade 2-14
medoid: GCF 000817815 1
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AAI clade 2-15
medoid: GCF 000730665 1
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AAI clade 2-16
medoid: GCF 013376875 1
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AAI clade 2-17
medoid: GCF 001557875 1
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AAI clade 2-18
medoid: GCA 002840125 1
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AAI clade 2-19
medoid: GCF 018599185 1
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AAI clade 2-20
medoid: GCA 903873045 1
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AAI clade 2-21
medoid: GCF 900092655 1
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AAI clade 2-22
medoid: GCF 902497845 1
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AAI clade 2-23
medoid: GCF 000013645 1
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AAI clade 2-23-1
medoid: GCF 009789655 1
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AAI clade 2-23-2
medoid: GCF 000013645 1
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AAI clade 2-23-2-1
medoid: GCF 003368325 1
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AAI clade 2-23-2-1-1
medoid: GCF 013426895 1
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AAI clade 2-23-2-1-2
medoid: GCF 000013645 1
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AAI clade 2-23-2-1-2-1
medoid: GCF 009362785 1
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AAI clade 2-23-2-1-2-2
medoid: GCA 002359635 1
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AAI clade 2-23-2-1-2-3
medoid: GCF 003368325 1
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AAI clade 2-23-2-1-2-3-1
medoid: GCA 017986195 1
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AAI clade 2-23-2-1-2-3-2
medoid: GCA 017989135 1
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AAI clade 2-23-2-1-2-3-3
medoid: GCF 900104795 1
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AAI clade 2-23-2-1-2-3-4
medoid: GCF 003002025 1
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AAI clade 2-23-2-1-2-3-5
medoid: GCF 904848585 1
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AAI clade 2-23-2-1-2-3-6
medoid: GCF 000472445 1
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AAI clade 2-23-2-1-2-3-7
medoid: GCF 902859935 1
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AAI clade 2-23-2-1-2-3-8
medoid: GCF 902859805 1
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AAI clade 2-23-2-1-2-3-8-1
medoid: GCF 902859805 1
5 datasets: GCF 001634365 1 (AAI: 95.82%), GCF 009690905 1 (AAI: 96.97%), GCF 900116445 1 (AAI: 97.67%), GCF 900230185 1 (AAI: 96.68%), and GCF 902859805 1 (AAI: 100.0%)
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AAI clade 2-23-2-1-2-3-8-2
medoid: GCF 003368325 1
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AAI clade 2-23-2-1-2-3-8-3
medoid: GCF 003610295 1
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AAI clade 2-23-2-1-2-3-8-4
medoid: GCF 003610895 1
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AAI clade 2-23-2-1-2-3-8-5
medoid: GCF 012927345 1
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AAI clade 2-23-2-1-2-3-8-6
medoid: GCF 900142905 1
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AAI clade 2-23-2-1-2-3-8-7
medoid: GCF 013177735 1
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AAI clade 2-23-2-1-2-3-8-8
medoid: GCF 902833645 1
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AAI clade 2-23-2-1-2-3-8-9
medoid: GCF 905220975 1
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AAI clade 2-23-2-1-2-3-8-1
medoid: GCF 902859805 1
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AAI clade 2-23-2-1-2-3-9
medoid: GCF 002362315 1
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AAI clade 2-23-2-1-2-3-10
medoid: GCF 002973525 1
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AAI clade 2-23-2-1-2-3-11
medoid: GCF 003339525 1
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AAI clade 2-23-2-1-2-3-12
medoid: GCF 003429005 1
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AAI clade 2-23-2-1-2-3-13
medoid: GCF 004359985 1
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AAI clade 2-23-2-1-2-3-14
medoid: GCF 004361815 1
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AAI clade 2-23-2-1-2-3-15
medoid: GCF 004363775 1
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AAI clade 2-23-2-1-2-3-16
medoid: GCF 005503145 1
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AAI clade 2-23-2-1-2-3-17
medoid: GCF 009455625 1
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AAI clade 2-23-2-1-2-3-18
medoid: GCF 009455685 1
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AAI clade 2-23-2-1-2-3-19
medoid: GCF 009765705 1
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AAI clade 2-23-2-1-2-3-20
medoid: GCF 900019265 1
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AAI clade 2-23-2-1-2-3-21
medoid: GCF 900099835 1
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AAI clade 2-23-2-1-2-3-22
medoid: GCF 900107685 1
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AAI clade 2-23-2-1-2-3-23
medoid: GCF 900142845 1
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AAI clade 2-23-2-1-2-3-24
medoid: GCF 900142195 1
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AAI clade 2-23-2-1-2-3-25
medoid: GCF 900996235 1
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AAI clade 2-23-2-1-2-3-26
medoid: GCF 900996245 1
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AAI clade 2-23-2-1-2-3-27
medoid: GCF 902859895 1
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AAI clade 2-23-2-1-2-3-1
medoid: GCA 017986195 1
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AAI clade 2-23-2-1-2-1
medoid: GCF 009362785 1
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AAI clade 2-23-2-1-1
medoid: GCF 013426895 1
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AAI clade 2-23-2-2
medoid: GCA 000980495 1
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AAI clade 2-23-2-1
medoid: GCF 003368325 1
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AAI clade 2-23-3
medoid: GCA 001544655 2
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AAI clade 2-23-1
medoid: GCF 009789655 1
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AAI clade 2-24
medoid: GCF 000820225 1
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AAI clade 2-25
medoid: GCF 001718835 1
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AAI clade 2-26
medoid: GCF 000745325 1
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AAI clade 2-27
medoid: GCF 000217915 1
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AAI clade 2-28
medoid: GCF 900496965 1
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AAI clade 2-29
medoid: GCF 000282135 1
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AAI clade 2-30
medoid: GCF 017303155 1
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AAI clade 2-31
medoid: GCA 014762765 1
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AAI clade 2-32
medoid: GCA 016845205 1
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AAI clade 2-33
medoid: GCF 004342485 1
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AAI clade 2-34
medoid: GCA 902509555 1
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AAI clade 2-35
medoid: GCF 900094595 1
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AAI clade 2-36
medoid: GCF 013177635 1
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AAI clade 2-37
medoid: GCF 005117025 1
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AAI clade 2-38
medoid: GCF 003202035 1
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AAI clade 2-39
medoid: GCF 018882415 1
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AAI clade 2-40
medoid: GCF 000744605 1
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AAI clade 2-41
medoid: GCA 017983615 1
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AAI clade 2-42
medoid: GCF 000219565 1
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AAI clade 2-43
medoid: GCA 016192435 1
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AAI clade 2-44
medoid: GCA 002340305 1
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AAI clade 2-45
medoid: GCF 002138415 1
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AAI clade 2-46
medoid: GCF 000773965 1
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AAI clade 2-47
medoid: GCF 000987835 1
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AAI clade 2-48
medoid: GCA 016183575 1
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AAI clade 2-49
medoid: GCF 000814845 2
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AAI clade 2-50
medoid: GCA 001899305 1
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AAI clade 2-51
medoid: GCF 000012325 1
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AAI clade 2-52
medoid: GCF 018336955 1
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AAI clade 2-53
medoid: GCF 900156155 1
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AAI clade 2-54
medoid: GCF 009795885 1
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AAI clade 2-1
medoid: GCF 014770435 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1