AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 2-1
medoid: GCF 014770435 1
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AAI clade 2-2
medoid: GCF 000765825 2
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AAI clade 2-2-1
medoid: GCF 900478295 1
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AAI clade 2-2-2
medoid: GCF 900198625 1
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AAI clade 2-2-3
medoid: GCA 000263275 1
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AAI clade 2-2-4
medoid: GCA 910578285 1
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AAI clade 2-2-5
medoid: GCA 014799995 1
7 datasets: GCA 014799995 1 (AAI: 100.0%), GCA 900770765 1 (AAI: 64.33%), GCF 000158455 1 (AAI: 67.65%), GCF 000687535 1 (AAI: 72.31%), GCF 000765675 1 (AAI: 74.73%), GCF 000765695 2 (AAI: 67.92%), and GCF 003364315 1 (AAI: 75.26%)
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AAI clade 2-2-6
medoid: GCF 008693005 1
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AAI clade 2-2-7
medoid: GCF 002287135 1
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AAI clade 2-2-8
medoid: GCA 019115525 1
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AAI clade 2-2-9
medoid: GCA 900766555 1
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AAI clade 2-2-10
medoid: GCF 000762845 2
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AAI clade 2-2-11
medoid: GCF 000765825 2
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AAI clade 2-2-12
medoid: GCF 003288905 1
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AAI clade 2-2-13
medoid: GCF 000200595 1
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AAI clade 2-2-14
medoid: GCF 900198405 1
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AAI clade 2-2-15
medoid: GCF 000762875 2
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AAI clade 2-2-16
medoid: GCF 001282945 1
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AAI clade 2-2-17
medoid: GCF 003364115 1
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AAI clade 2-2-18
medoid: GCF 002272895 1
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AAI clade 2-2-19
medoid: GCF 002272925 1
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AAI clade 2-2-20
medoid: GCF 003245365 1
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AAI clade 2-2-21
medoid: GCF 003288805 1
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AAI clade 2-2-22
medoid: GCF 003288815 1
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AAI clade 2-2-23
medoid: GCF 003288845 1
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AAI clade 2-2-24
medoid: GCF 003364335 1
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AAI clade 2-2-25
medoid: GCF 902196125 1
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AAI clade 2-2-1
medoid: GCF 900478295 1
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AAI clade 2-3
medoid: GCA 003028315 1
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AAI clade 2-4
medoid: GCF 900636545 1
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AAI clade 2-5
medoid: GCF 009831415 1
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AAI clade 2-6
medoid: GCF 016599715 1
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AAI clade 2-7
medoid: GCF 009176645 1
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AAI clade 2-8
medoid: GCF 002221525 1
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AAI clade 2-9
medoid: GCF 000210895 1
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AAI clade 2-10
medoid: GCA 003250495 1
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AAI clade 2-11
medoid: GCF 005497185 1
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AAI clade 2-12
medoid: GCF 001579805 1
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AAI clade 2-13
medoid: GCF 003048405 1
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AAI clade 2-14
medoid: GCF 000817815 1
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AAI clade 2-15
medoid: GCF 000730665 1
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AAI clade 2-16
medoid: GCF 013376875 1
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AAI clade 2-17
medoid: GCF 001557875 1
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AAI clade 2-18
medoid: GCA 002840125 1
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AAI clade 2-19
medoid: GCF 018599185 1
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AAI clade 2-20
medoid: GCA 903873045 1
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AAI clade 2-21
medoid: GCF 900092655 1
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AAI clade 2-22
medoid: GCF 902497845 1
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AAI clade 2-23
medoid: GCF 000013645 1
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AAI clade 2-24
medoid: GCF 000820225 1
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AAI clade 2-25
medoid: GCF 001718835 1
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AAI clade 2-26
medoid: GCF 000745325 1
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AAI clade 2-27
medoid: GCF 000217915 1
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AAI clade 2-28
medoid: GCF 900496965 1
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AAI clade 2-29
medoid: GCF 000282135 1
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AAI clade 2-30
medoid: GCF 017303155 1
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AAI clade 2-31
medoid: GCA 014762765 1
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AAI clade 2-32
medoid: GCA 016845205 1
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AAI clade 2-33
medoid: GCF 004342485 1
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AAI clade 2-34
medoid: GCA 902509555 1
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AAI clade 2-35
medoid: GCF 900094595 1
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AAI clade 2-36
medoid: GCF 013177635 1
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AAI clade 2-37
medoid: GCF 005117025 1
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AAI clade 2-38
medoid: GCF 003202035 1
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AAI clade 2-39
medoid: GCF 018882415 1
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AAI clade 2-40
medoid: GCF 000744605 1
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AAI clade 2-41
medoid: GCA 017983615 1
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AAI clade 2-42
medoid: GCF 000219565 1
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AAI clade 2-43
medoid: GCA 016192435 1
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AAI clade 2-44
medoid: GCA 002340305 1
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AAI clade 2-45
medoid: GCF 002138415 1
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AAI clade 2-46
medoid: GCF 000773965 1
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AAI clade 2-47
medoid: GCF 000987835 1
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AAI clade 2-48
medoid: GCA 016183575 1
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AAI clade 2-49
medoid: GCF 000814845 2
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AAI clade 2-50
medoid: GCA 001899305 1
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AAI clade 2-51
medoid: GCF 000012325 1
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AAI clade 2-52
medoid: GCF 018336955 1
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AAI clade 2-53
medoid: GCF 900156155 1
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AAI clade 2-54
medoid: GCF 009795885 1
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AAI clade 2-1
medoid: GCF 014770435 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1