AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
    • AAI clade 18-1 medoid: GCA 910575265 1
    • AAI clade 18-2 medoid: GCA 017560175 1
      5 datasets: GCA 001725215 1 (AAI: 53.96%), GCA 015068445 1 (AAI: 60.61%), GCA 017396925 1 (AAI: 72.88%), GCA 017421885 1 (AAI: 63.76%), and GCA 017560175 1 (AAI: 100.0%)
    • AAI clade 18-3 medoid: GCA 910586105 1
    • AAI clade 18-4 medoid: GCA 017394205 1
    • AAI clade 18-5 medoid: GCA 002424295 1
    • AAI clade 18-6 medoid: GCA 002431305 1
    • AAI clade 18-7 medoid: GCA 017397565 1
    • AAI clade 18-8 medoid: GCF 002157465 1
    • AAI clade 18-9 medoid: GCF 900625105 1
    • AAI clade 18-10 medoid: GCA 003149835 1
    • AAI clade 18-11 medoid: GCA 900544445 1
    • AAI clade 18-12 medoid: GCA 900539885 1
    • AAI clade 18-13 medoid: GCA 003477405 1
    • AAI clade 18-14 medoid: GCA 900553545 1
    • AAI clade 18-15 medoid: GCA 017625835 1
    • AAI clade 18-16 medoid: GCA 003524145 1
    • AAI clade 18-17 medoid: GCA 017624915 1
    • AAI clade 18-18 medoid: GCA 900764755 1
    • AAI clade 18-19 medoid: GCA 900321635 1
    • AAI clade 18-20 medoid: GCA 009785335 1
    • AAI clade 18-21 medoid: GCA 015063955 1
    • AAI clade 18-22 medoid: GCA 019114825 1
    • AAI clade 18-23 medoid: GCA 017453005 1
    • AAI clade 18-24 medoid: GCA 017652965 1
    • AAI clade 18-25 medoid: GCA 015065215 1
    • AAI clade 18-26 medoid: GCA 017453325 1
    • AAI clade 18-27 medoid: GCA 017482465 1
    • AAI clade 18-28 medoid: GCA 900321515 1
    • AAI clade 18-29 medoid: GCA 015067125 1
    • AAI clade 18-30 medoid: GCA 015068085 1
    • AAI clade 18-31 medoid: GCA 902773455 1
    • AAI clade 18-32 medoid: GCA 017616055 1
    • AAI clade 18-33 medoid: GCA 017507805 1
    • AAI clade 18-34 medoid: GCA 017532025 1
    • AAI clade 18-35 medoid: GCA 017399025 1
    • AAI clade 18-36 medoid: GCA 017502425 1
    • AAI clade 18-37 medoid: GCA 017556565 1
    • AAI clade 18-38 medoid: GCA 017550315 1
    • AAI clade 18-39 medoid: GCA 017453305 1
    • AAI clade 18-40 medoid: GCA 017462035 1
    • AAI clade 18-41 medoid: GCA 017521295 1
    • AAI clade 18-42 medoid: GCA 017533425 1
    • AAI clade 18-43 medoid: GCA 900543305 1
    • AAI clade 18-44 medoid: GCA 019113005 1
    • AAI clade 18-45 medoid: GCA 018365995 1
    • AAI clade 18-46 medoid: GCA 900315465 1
    • AAI clade 18-47 medoid: GCA 900315715 1
    • AAI clade 18-48 medoid: GCA 900539675 1
    • AAI clade 18-49 medoid: GCA 902803695 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1