AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
    • AAI clade 16-1 medoid: GCF 002161085 1
    • AAI clade 16-2 medoid: GCA 902791215 1
    • AAI clade 16-3 medoid: GCA 000432135 1
    • AAI clade 16-4 medoid: GCA 018712645 1
    • AAI clade 16-5 medoid: GCA 900551355 1
    • AAI clade 16-6 medoid: GCA 910587705 1
    • AAI clade 16-7 medoid: GCA 902767845 1
    • AAI clade 16-8 medoid: GCA 014799505 1
      • AAI clade 16-8-1 medoid: GCA 004560375 1
        6 datasets: GCA 004560375 1 (AAI: 100.0%), GCA 910575695 1 (AAI: 72.23%), GCA 910579595 1 (AAI: 71.87%), GCA 910584285 1 (AAI: 86.85%), GCA 910585265 1 (AAI: 79.21%), and GCA 910587285 1 (AAI: 72.73%)
      • AAI clade 16-8-2 medoid: GCA 014799505 1
      • AAI clade 16-8-3 medoid: GCA 017397605 1
      • AAI clade 16-8-4 medoid: GCA 017518445 1
      • AAI clade 16-8-5 medoid: GCF 016902575 1
      • AAI clade 16-8-6 medoid: GCA 018716015 1
      • AAI clade 16-8-7 medoid: GCA 900549405 1
      • AAI clade 16-8-8 medoid: GCA 900549885 1
      • AAI clade 16-8-9 medoid: GCA 910587395 1
      • AAI clade 16-8-10 medoid: GCA 910587255 1
    • AAI clade 16-9 medoid: GCA 910588045 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1