AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
    • AAI clade 16-1 medoid: GCF 002161085 1
    • AAI clade 16-2 medoid: GCA 902791215 1
    • AAI clade 16-3 medoid: GCA 000432135 1
    • AAI clade 16-4 medoid: GCA 018712645 1
      • AAI clade 16-4-1 medoid: GCA 900546075 1
      • AAI clade 16-4-2 medoid: GCA 018712645 1
      • AAI clade 16-4-3 medoid: GCA 017440925 1
        • AAI clade 16-4-3-1 medoid: GCA 017440925 1
        • AAI clade 16-4-3-2 medoid: GCA 017457285 1
        • AAI clade 16-4-3-3 medoid: GCA 900762245 1
          6 datasets: GCA 015067615 1 (AAI: 68.05%), GCA 015068155 1 (AAI: 63.11%), GCA 017398105 1 (AAI: 76.56%), GCA 017436785 1 (AAI: 78.45%), GCA 017505505 1 (AAI: 78.02%), and GCA 900762245 1 (AAI: 100.0%)
        • AAI clade 16-4-3-4 medoid: GCA 015067895 1
        • AAI clade 16-4-3-5 medoid: GCA 015068305 1
        • AAI clade 16-4-3-6 medoid: GCA 017473455 1
      • AAI clade 16-4-4 medoid: GCA 015058265 1
      • AAI clade 16-4-5 medoid: GCA 015064155 1
      • AAI clade 16-4-6 medoid: GCA 015064355 1
      • AAI clade 16-4-7 medoid: GCA 015064725 1
      • AAI clade 16-4-8 medoid: GCA 015067545 1
      • AAI clade 16-4-9 medoid: GCA 900545515 1
      • AAI clade 16-4-10 medoid: GCA 017416245 1
      • AAI clade 16-4-11 medoid: GCA 017624715 1
      • AAI clade 16-4-12 medoid: GCA 017964055 1
      • AAI clade 16-4-13 medoid: GCF 018918045 1
      • AAI clade 16-4-14 medoid: GCA 017416325 1
      • AAI clade 16-4-15 medoid: GCA 017547505 1
      • AAI clade 16-4-16 medoid: GCA 017442785 1
      • AAI clade 16-4-17 medoid: GCA 017444965 1
      • AAI clade 16-4-18 medoid: GCA 017453405 1
      • AAI clade 16-4-19 medoid: GCA 905234425 1
      • AAI clade 16-4-20 medoid: GCA 017544745 1
      • AAI clade 16-4-21 medoid: GCA 017556125 1
      • AAI clade 16-4-22 medoid: GCA 017561145 1
      • AAI clade 16-4-23 medoid: GCA 017613225 1
      • AAI clade 16-4-24 medoid: GCA 017628075 1
      • AAI clade 16-4-25 medoid: GCA 900319455 1
      • AAI clade 16-4-26 medoid: GCA 900557635 1
      • AAI clade 16-4-27 medoid: GCA 902766115 1
      • AAI clade 16-4-28 medoid: GCA 902782785 1
      • AAI clade 16-4-29 medoid: GCA 902782875 1
      • AAI clade 16-4-30 medoid: GCF 904420125 1
    • AAI clade 16-5 medoid: GCA 900551355 1
    • AAI clade 16-6 medoid: GCA 910587705 1
    • AAI clade 16-7 medoid: GCA 902767845 1
    • AAI clade 16-8 medoid: GCA 014799505 1
    • AAI clade 16-9 medoid: GCA 910588045 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1