AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: GCA 017502845 1
• AAI clade 2 medoid: GCA 002434265 1
• AAI clade 3 medoid: GCA 013002175 1
• AAI clade 4 medoid: GCA 900110395 1
• AAI clade 5 medoid: GCA 012798955 1
• AAI clade 6 medoid: GCA 013415575 1
• AAI clade 7 medoid: GCF 008638345 1
• AAI clade 8 medoid: GCF 000807255 1
• AAI clade 9 medoid: GCF 001050135 1
• AAI clade 10 medoid: GCA 002717245 1
• AAI clade 11 medoid: GCA 017478625 1
• AAI clade 12 medoid: GCA 009773355 1
• AAI clade 13 medoid: GCA 905200435 1
• AAI clade 14 medoid: GCA 017516885 1
• AAI clade 15 medoid: GCA 004321885 1
• AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 16-1 medoid: GCF 002161085 1
  • AAI clade 16-2 medoid: GCA 902791215 1
    • AAI clade 16-2-1 medoid: GCA 004558025 1
    • AAI clade 16-2-2 medoid: GCA 900317855 1
    • AAI clade 16-2-3 medoid: GCA 017515345 1
    • AAI clade 16-2-4 medoid: GCA 902791215 1
    • AAI clade 16-2-5 medoid: GCA 900545405 1
      • AAI clade 16-2-5-1 medoid: GCA 004557735 1
      • AAI clade 16-2-5-2 medoid: GCA 900545405 1
      • AAI clade 16-2-5-3 medoid: GCA 015068035 1
      • AAI clade 16-2-5-4 medoid: GCA 012719035 1
      • AAI clade 16-2-5-5 medoid: GCA 017477525 1
        5 datasets: GCA 015068365 1 (AAI: 58.51%), GCA 017455015 1 (AAI: 63.43%), GCA 017477525 1 (AAI: 100.0%), GCA 017558545 1 (AAI: 54.48%), and GCA 905236305 1 (AAI: 61.89%)
      • AAI clade 16-2-5-6 medoid: GCA 017535635 1
      • AAI clade 16-2-5-7 medoid: GCA 900759385 1
      • AAI clade 16-2-5-8 medoid: GCA 905234575 1
  • AAI clade 16-3 medoid: GCA 000432135 1
  • AAI clade 16-4 medoid: GCA 018712645 1
  • AAI clade 16-5 medoid: GCA 900551355 1
  • AAI clade 16-6 medoid: GCA 910587705 1
  • AAI clade 16-7 medoid: GCA 902767845 1
  • AAI clade 16-8 medoid: GCA 014799505 1
  • AAI clade 16-9 medoid: GCA 910588045 1
• AAI clade 17 medoid: GCA 017648525 1
• AAI clade 18 medoid: GCA 019113065 1
• AAI clade 19 medoid: GCA 016795075 1
• AAI clade 20 medoid: GCF 001467025 1
• AAI clade 21 medoid: GCA 017642855 1
• AAI clade 22 medoid: GCA 017408305 1
• AAI clade 23 medoid: GCA 002436405 1