AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
    • AAI clade 15-1 medoid: GCA 001872265 1
    • AAI clade 15-2 medoid: GCA 018896595 1
    • AAI clade 15-3 medoid: GCA 001787205 1
      • AAI clade 15-3-1 medoid: GCA 903854645 1
      • AAI clade 15-3-2 medoid: GCA 001787205 1
        • AAI clade 15-3-2-1 medoid: GCA 903838985 1
        • AAI clade 15-3-2-2 medoid: GCA 001786955 1
          • AAI clade 15-3-2-2-1 medoid: GCA 001785985 1
          • AAI clade 15-3-2-2-2 medoid: GCA 001786955 1
          • AAI clade 15-3-2-2-3 medoid: GCA 001785355 1
          • AAI clade 15-3-2-2-4 medoid: GCA 001785675 1
            5 datasets: GCA 001785445 1 (AAI: 59.26%), GCA 001785675 1 (AAI: 100.0%), GCA 001786745 1 (AAI: 58.93%), GCA 001787005 1 (AAI: 58.82%), and GCA 001787035 1 (AAI: 59.92%)
          • AAI clade 15-3-2-2-5 medoid: GCA 001785615 1
          • AAI clade 15-3-2-2-6 medoid: GCA 001785725 1
          • AAI clade 15-3-2-2-7 medoid: GCA 001785805 1
          • AAI clade 15-3-2-2-8 medoid: GCA 001786015 1
          • AAI clade 15-3-2-2-9 medoid: GCA 001786095 1
          • AAI clade 15-3-2-2-10 medoid: GCA 001786225 1
          • AAI clade 15-3-2-2-11 medoid: GCA 001786365 1
          • AAI clade 15-3-2-2-12 medoid: GCA 001786835 1
          • AAI clade 15-3-2-2-13 medoid: GCA 016199805 1
          • AAI clade 15-3-2-2-14 medoid: GCA 017984185 1
          • AAI clade 15-3-2-2-15 medoid: GCA 017991915 1
          • AAI clade 15-3-2-2-16 medoid: GCA 018061035 1
          • AAI clade 15-3-2-2-17 medoid: GCA 018816985 1
        • AAI clade 15-3-2-3 medoid: GCA 018827845 1
      • AAI clade 15-3-3 medoid: GCA 000998425 1
      • AAI clade 15-3-4 medoid: GCA 903834855 1
    • AAI clade 15-4 medoid: GCA 016206085 1
    • AAI clade 15-5 medoid: GCA 001001115 1
    • AAI clade 15-6 medoid: GCA 903837175 1
    • AAI clade 15-7 medoid: GCA 016178535 1
    • AAI clade 15-8 medoid: GCA 003170325 1
    • AAI clade 15-9 medoid: GCA 016217925 1
    • AAI clade 15-10 medoid: GCA 018968865 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1