AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: GCA 017502845 1
• AAI clade 2 medoid: GCA 002434265 1
• AAI clade 3 medoid: GCA 013002175 1
• AAI clade 4 medoid: GCA 900110395 1
• AAI clade 5 medoid: GCA 012798955 1
• AAI clade 6 medoid: GCA 013415575 1
• AAI clade 7 medoid: GCF 008638345 1
• AAI clade 8 medoid: GCF 000807255 1
• AAI clade 9 medoid: GCF 001050135 1
• AAI clade 10 medoid: GCA 002717245 1
• AAI clade 11 medoid: GCA 017478625 1
• AAI clade 12 medoid: GCA 009773355 1
• AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 13-1 medoid: GCA 014845975 1
  • AAI clade 13-2 medoid: GCA 900758895 1
  • AAI clade 13-3 medoid: GCA 900547225 1
  • AAI clade 13-4 medoid: GCA 017433415 1
    • AAI clade 13-4-1 medoid: GCA 017433415 1
    • AAI clade 13-4-2 medoid: GCA 017460745 1
      • AAI clade 13-4-2-1 medoid: GCA 902782535 1
      • AAI clade 13-4-2-2 medoid: GCA 017460745 1
        6 datasets: GCA 017460745 1 (AAI: 100.0%), GCA 017472015 1 (AAI: 63.03%), GCA 017528315 1 (AAI: 67.95%), GCA 900320425 1 (AAI: 63.38%), GCA 902782915 1 (AAI: 61.31%), and GCA 902797275 1 (AAI: 57.23%)
  • AAI clade 13-5 medoid: GCA 900549325 1
  • AAI clade 13-6 medoid: GCA 900768345 1
• AAI clade 14 medoid: GCA 017516885 1
• AAI clade 15 medoid: GCA 004321885 1
• AAI clade 16 medoid: GCA 905236305 1
• AAI clade 17 medoid: GCA 017648525 1
• AAI clade 18 medoid: GCA 019113065 1
• AAI clade 19 medoid: GCA 016795075 1
• AAI clade 20 medoid: GCF 001467025 1
• AAI clade 21 medoid: GCA 017642855 1
• AAI clade 22 medoid: GCA 017408305 1
• AAI clade 23 medoid: GCA 002436405 1