AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: GCA 017502845 1
• AAI clade 2 medoid: GCA 002434265 1
• AAI clade 3 medoid: GCA 013002175 1
• AAI clade 4 medoid: GCA 900110395 1
• AAI clade 5 medoid: GCA 012798955 1
• AAI clade 6 medoid: GCA 013415575 1
• AAI clade 7 medoid: GCF 008638345 1
• AAI clade 8 medoid: GCF 000807255 1
• AAI clade 9 medoid: GCF 001050135 1
• AAI clade 10 medoid: GCA 002717245 1
• AAI clade 11 medoid: GCA 017478625 1
• AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 12-1 medoid: GCA 017406465 1
  • AAI clade 12-2 medoid: GCA 002304435 1
  • AAI clade 12-3 medoid: GCA 011525685 1
  • AAI clade 12-4 medoid: GCA 002686085 1
  • AAI clade 12-5 medoid: GCA 904424815 1
  • AAI clade 12-6 medoid: GCA 002342345 1
  • AAI clade 12-7 medoid: GCA 903827375 1
  • AAI clade 12-8 medoid: GCA 903848465 1
  • AAI clade 12-9 medoid: GCA 018239665 1
  • AAI clade 12-10 medoid: GCA 903839035 1
    • AAI clade 12-10-1 medoid: GCA 000972765 1
    • AAI clade 12-10-2 medoid: GCA 002737275 1
    • AAI clade 12-10-3 medoid: GCA 016715765 1
    • AAI clade 12-10-4 medoid: GCA 002367815 1
    • AAI clade 12-10-5 medoid: GCF 007559335 1
    • AAI clade 12-10-6 medoid: GCA 002455175 1
    • AAI clade 12-10-7 medoid: GCA 002713695 1
    • AAI clade 12-10-8 medoid: GCA 003054665 1
    • AAI clade 12-10-9 medoid: GCA 903890485 1
      8 datasets: GCA 003140665 1 (AAI: 62.41%), GCA 003151495 1 (AAI: 67.77%), GCA 003151515 1 (AAI: 62.8%), GCA 003164715 1 (AAI: 66.08%), GCA 003168315 1 (AAI: 63.7%), GCA 903887455 1 (AAI: 73.37%), GCA 903890485 1 (AAI: 100.0%), and GCA 903919205 1 (AAI: 64.99%)
    • AAI clade 12-10-10 medoid: GCA 903839035 1
    • AAI clade 12-10-11 medoid: GCA 903948415 1
    • AAI clade 12-10-12 medoid: GCA 903840415 1
    • AAI clade 12-10-13 medoid: GCA 903938935 1
    • AAI clade 12-10-14 medoid: GCA 010027235 1
    • AAI clade 12-10-15 medoid: GCA 016721945 1
    • AAI clade 12-10-16 medoid: GCA 016794725 1
    • AAI clade 12-10-17 medoid: GCA 017988885 1
    • AAI clade 12-10-18 medoid: GCA 903859715 1
    • AAI clade 12-10-19 medoid: GCA 903877135 1
    • AAI clade 12-10-20 medoid: GCA 903827245 1
    • AAI clade 12-10-21 medoid: GCA 903869955 1
    • AAI clade 12-10-22 medoid: GCA 903873805 1
    • AAI clade 12-10-23 medoid: GCA 903916755 1
    • AAI clade 12-10-24 medoid: GCA 903925425 1
    • AAI clade 12-10-25 medoid: GCF 002310495 1
  • AAI clade 12-11 medoid: GCA 002304425 1
  • AAI clade 12-12 medoid: GCA 017554445 1
  • AAI clade 12-13 medoid: GCA 905182435 1
  • AAI clade 12-14 medoid: GCA 900549415 1
  • AAI clade 12-15 medoid: GCA 002347655 1
  • AAI clade 12-16 medoid: GCA 002338345 1
  • AAI clade 12-17 medoid: GCA 017558005 1
  • AAI clade 12-18 medoid: GCA 002713685 1
  • AAI clade 12-19 medoid: GCA 016795385 1
  • AAI clade 12-20 medoid: GCA 903831635 1
  • AAI clade 12-21 medoid: GCA 004293385 1
  • AAI clade 12-22 medoid: GCA 003220075 1
  • AAI clade 12-23 medoid: GCA 015658765 1
  • AAI clade 12-24 medoid: GCA 902802945 1
  • AAI clade 12-25 medoid: GCA 015061685 1
  • AAI clade 12-26 medoid: GCA 900320095 1
  • AAI clade 12-27 medoid: GCA 017435365 1
  • AAI clade 12-28 medoid: GCA 903939515 1
  • AAI clade 12-29 medoid: GCA 017413145 1
  • AAI clade 12-30 medoid: GCF 000020225 1
  • AAI clade 12-31 medoid: GCA 014239335 1
  • AAI clade 12-32 medoid: GCA 903921455 1
  • AAI clade 12-33 medoid: GCA 003218415 1
  • AAI clade 12-34 medoid: GCA 017531845 1
• AAI clade 13 medoid: GCA 905200435 1
• AAI clade 14 medoid: GCA 017516885 1
• AAI clade 15 medoid: GCA 004321885 1
• AAI clade 16 medoid: GCA 905236305 1
• AAI clade 17 medoid: GCA 017648525 1
• AAI clade 18 medoid: GCA 019113065 1
• AAI clade 19 medoid: GCA 016795075 1
• AAI clade 20 medoid: GCF 001467025 1
• AAI clade 21 medoid: GCA 017642855 1
• AAI clade 22 medoid: GCA 017408305 1
• AAI clade 23 medoid: GCA 002436405 1