AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 11-1
medoid: GCA 017447265 1
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AAI clade 11-2
medoid: GCA 014801985 1
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AAI clade 11-3
medoid: GCA 902362375 1
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AAI clade 11-4
medoid: GCF 002224675 1
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AAI clade 11-4-1
medoid: GCF 002224675 1
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AAI clade 11-4-1-1
medoid: GCF 002224675 1
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AAI clade 11-4-1-1-1
medoid: GCF 019127135 1
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AAI clade 11-4-1-1-2
medoid: GCF 002224675 1
8 datasets: GCA 002297965 1 (AAI: 76.56%), GCA 019249655 1 (AAI: 93.38%), GCA 900544825 1 (AAI: 97.38%), GCA 900551985 1 (AAI: 95.02%), GCA 900555035 1 (AAI: 83.91%), GCA 900557035 1 (AAI: 87.8%), GCF 002224675 1 (AAI: 100.0%), and GCF 009494395 1 (AAI: 89.61%)
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AAI clade 11-4-1-1-3
medoid: GCA 900770515 1
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AAI clade 11-4-1-1-1
medoid: GCF 019127135 1
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AAI clade 11-4-1-2
medoid: GCA 000435635 1
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AAI clade 11-4-1-3
medoid: GCF 004535825 1
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AAI clade 11-4-1-4
medoid: GCA 900769055 1
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AAI clade 11-4-1-5
medoid: GCA 002409785 1
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AAI clade 11-4-1-6
medoid: GCA 003483565 1
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AAI clade 11-4-1-7
medoid: GCA 900316015 1
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AAI clade 11-4-1-8
medoid: GCA 900546575 1
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AAI clade 11-4-1-9
medoid: GCA 905198745 1
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AAI clade 11-4-1-10
medoid: GCA 905236815 1
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AAI clade 11-4-1-1
medoid: GCF 002224675 1
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AAI clade 11-4-2
medoid: GCA 900317685 1
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AAI clade 11-4-3
medoid: GCF 000373185 1
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AAI clade 11-4-4
medoid: GCF 018127965 1
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AAI clade 11-4-1
medoid: GCF 002224675 1
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AAI clade 11-5
medoid: GCF 000519105 1
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AAI clade 11-6
medoid: GCF 000154105 1
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AAI clade 11-7
medoid: GCA 018054805 1
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AAI clade 11-8
medoid: GCA 900544195 1
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AAI clade 11-9
medoid: GCA 014801735 1
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AAI clade 11-10
medoid: GCA 017449675 1
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AAI clade 11-11
medoid: GCA 017477245 1
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AAI clade 11-12
medoid: GCA 900541585 1
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AAI clade 11-13
medoid: GCA 016715075 1
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AAI clade 11-14
medoid: GCA 002372855 1
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AAI clade 11-15
medoid: GCA 900317055 1
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AAI clade 11-16
medoid: GCA 902791865 1
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AAI clade 11-17
medoid: GCA 902774295 1
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AAI clade 11-18
medoid: GCA 903945175 1
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AAI clade 11-19
medoid: GCF 003712195 1
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AAI clade 11-20
medoid: GCA 902801475 1
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AAI clade 11-21
medoid: GCA 017438945 1
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AAI clade 11-22
medoid: GCA 017961145 1
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AAI clade 11-23
medoid: GCA 015060255 1
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AAI clade 11-24
medoid: GCA 017394705 1
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AAI clade 11-25
medoid: GCA 017405965 1
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AAI clade 11-26
medoid: GCF 000025925 1
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AAI clade 11-27
medoid: GCA 016286385 1
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AAI clade 11-28
medoid: GCA 017465575 1
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AAI clade 11-1
medoid: GCA 017447265 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1