AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 10-1
medoid: GCA 902595625 1
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AAI clade 10-2
medoid: GCA 902602135 1
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AAI clade 10-3
medoid: GCA 902597515 1
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AAI clade 10-4
medoid: GCA 902568425 1
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AAI clade 10-5
medoid: GCA 902624345 1
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AAI clade 10-5-1
medoid: GCA 902590295 1
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AAI clade 10-5-1-1
medoid: GCA 000419465 1
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AAI clade 10-5-1-2
medoid: GCA 902590295 1
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AAI clade 10-5-1-2-1
medoid: GCA 003211695 1
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AAI clade 10-5-1-2-2
medoid: GCA 902590295 1
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AAI clade 10-5-1-2-2-1
medoid: GCA 002311855 1
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AAI clade 10-5-1-2-2-2
medoid: GCA 902583455 1
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AAI clade 10-5-1-2-2-3
medoid: GCA 902522325 1
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AAI clade 10-5-1-2-2-4
medoid: GCA 902600485 1
4 datasets: GCA 902535155 1 (AAI: 73.09%), GCA 902585365 1 (AAI: 87.89%), GCA 902600485 1 (AAI: 100.0%), and GCA 902628495 1 (AAI: 93.96%)
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AAI clade 10-5-1-2-2-5
medoid: GCA 903952265 1
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AAI clade 10-5-1-2-2-1
medoid: GCA 002311855 1
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AAI clade 10-5-1-2-1
medoid: GCA 003211695 1
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AAI clade 10-5-1-1
medoid: GCA 000419465 1
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AAI clade 10-5-2
medoid: GCA 902587435 1
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AAI clade 10-5-3
medoid: GCA 902560075 1
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AAI clade 10-5-4
medoid: GCF 001179965 1
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AAI clade 10-5-5
medoid: GCA 902632275 1
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AAI clade 10-5-6
medoid: GCA 902597055 1
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AAI clade 10-5-1
medoid: GCA 902590295 1
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AAI clade 10-6
medoid: GCA 902589395 1
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AAI clade 10-7
medoid: GCA 902541515 1
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AAI clade 10-8
medoid: GCA 902535625 1
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AAI clade 10-9
medoid: GCA 902533965 1
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AAI clade 10-10
medoid: GCA 902604225 1
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AAI clade 10-11
medoid: GCA 902599045 1
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AAI clade 10-12
medoid: GCA 902622795 1
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AAI clade 10-13
medoid: GCA 902546375 1
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AAI clade 10-1
medoid: GCA 902595625 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1