AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-6-1
medoid: GCF 013036995 1
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AAI clade 1-6-2
medoid: GCF 900537995 1
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AAI clade 1-6-3
medoid: GCF 002234575 2
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AAI clade 1-6-4
medoid: GCA 902362455 1
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AAI clade 1-6-5
medoid: GCA 900551895 1
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AAI clade 1-6-6
medoid: GCF 000296385 1
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AAI clade 1-6-7
medoid: GCF 018919065 1
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AAI clade 1-6-8
medoid: GCA 910575075 1
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AAI clade 1-6-9
medoid: GCF 002159505 1
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AAI clade 1-6-10
medoid: GCA 910574885 1
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AAI clade 1-6-11
medoid: GCA 902762905 1
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AAI clade 1-6-12
medoid: GCA 910575055 1
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AAI clade 1-6-13
medoid: GCA 004562915 1
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AAI clade 1-6-14
medoid: GCA 900539115 1
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AAI clade 1-6-15
medoid: GCA 910579085 1
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AAI clade 1-6-16
medoid: GCA 002434335 1
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AAI clade 1-6-17
medoid: GCA 902362875 1
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AAI clade 1-6-18
medoid: GCA 017480495 1
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AAI clade 1-6-19
medoid: GCF 900218035 1
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AAI clade 1-6-20
medoid: GCF 003478505 1
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AAI clade 1-6-20-1
medoid: GCA 001304875 1
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AAI clade 1-6-20-2
medoid: GCA 018377235 1
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AAI clade 1-6-20-3
medoid: GCA 002309675 1
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AAI clade 1-6-20-4
medoid: GCA 002315255 1
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AAI clade 1-6-20-5
medoid: GCA 002315555 1
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AAI clade 1-6-20-6
medoid: GCA 002371295 1
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AAI clade 1-6-20-7
medoid: GCA 002892395 1
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AAI clade 1-6-20-8
medoid: GCA 003478355 1
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AAI clade 1-6-20-9
medoid: GCA 003478935 1
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AAI clade 1-6-20-10
medoid: GCA 910586205 1
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AAI clade 1-6-20-11
medoid: GCA 014385265 1
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AAI clade 1-6-20-12
medoid: GCA 017387285 1
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AAI clade 1-6-20-13
medoid: GCA 017442865 1
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AAI clade 1-6-20-14
medoid: GCA 017446045 1
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AAI clade 1-6-20-15
medoid: GCA 017449925 1
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AAI clade 1-6-20-16
medoid: GCA 017455005 1
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AAI clade 1-6-20-17
medoid: GCA 017460845 1
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AAI clade 1-6-20-18
medoid: GCA 017479935 1
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AAI clade 1-6-20-19
medoid: GCA 017624115 1
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AAI clade 1-6-20-20
medoid: GCA 018378255 1
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AAI clade 1-6-20-21
medoid: GCA 900045905 1
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AAI clade 1-6-20-22
medoid: GCA 900321915 1
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AAI clade 1-6-20-23
medoid: GCF 003478505 1
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AAI clade 1-6-20-24
medoid: GCF 900626075 1
3 datasets: GCA 900547735 1 (AAI: 94.69%), GCF 000466485 1 (AAI: 80.2%), and GCF 900626075 1 (AAI: 100.0%)
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AAI clade 1-6-20-25
medoid: GCA 900772695 1
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AAI clade 1-6-20-26
medoid: GCA 902363445 1
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AAI clade 1-6-20-27
medoid: GCA 902770965 1
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AAI clade 1-6-20-28
medoid: GCA 902783095 1
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AAI clade 1-6-20-29
medoid: GCA 902783295 1
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AAI clade 1-6-20-30
medoid: GCA 902790095 1
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AAI clade 1-6-20-31
medoid: GCA 902796795 1
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AAI clade 1-6-20-32
medoid: GCA 910574345 1
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AAI clade 1-6-20-33
medoid: GCA 910575275 1
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AAI clade 1-6-20-34
medoid: GCA 910585645 1
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AAI clade 1-6-20-35
medoid: GCA 910585435 1
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AAI clade 1-6-20-36
medoid: GCA 910584845 1
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AAI clade 1-6-20-37
medoid: GCA 910586315 1
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AAI clade 1-6-20-38
medoid: GCA 910588815 1
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AAI clade 1-6-20-39
medoid: GCF 000235505 1
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AAI clade 1-6-20-40
medoid: GCF 000242235 1
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AAI clade 1-6-20-41
medoid: GCF 002160755 1
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AAI clade 1-6-20-42
medoid: GCF 003014445 1
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AAI clade 1-6-20-43
medoid: GCF 003024715 1
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AAI clade 1-6-20-44
medoid: GCF 003435375 1
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AAI clade 1-6-20-1
medoid: GCA 001304875 1
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AAI clade 1-6-21
medoid: GCA 905212195 1
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AAI clade 1-6-22
medoid: GCA 014384995 1
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AAI clade 1-6-23
medoid: GCF 002222595 2
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AAI clade 1-6-24
medoid: GCA 004294845 1
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AAI clade 1-6-25
medoid: GCA 902788035 1
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AAI clade 1-6-26
medoid: GCA 017556805 1
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AAI clade 1-6-27
medoid: GCA 902762955 1
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AAI clade 1-6-28
medoid: GCA 900540475 1
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AAI clade 1-6-29
medoid: GCA 002369135 1
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AAI clade 1-6-30
medoid: GCF 003461625 1
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AAI clade 1-6-31
medoid: GCA 902761665 1
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AAI clade 1-6-32
medoid: GCA 910574805 1
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AAI clade 1-6-33
medoid: GCF 002161065 1
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AAI clade 1-6-34
medoid: GCA 910584595 1
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AAI clade 1-6-35
medoid: GCA 009779835 1
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AAI clade 1-6-36
medoid: GCA 910576325 1
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AAI clade 1-6-37
medoid: GCF 004340975 1
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AAI clade 1-6-38
medoid: GCA 910574895 1
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AAI clade 1-6-1
medoid: GCF 013036995 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1