AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
    • AAI clade 1-1 medoid: GCA 900546775 1
    • AAI clade 1-2 medoid: GCA 905221215 1
    • AAI clade 1-3 medoid: GCF 015326965 1
    • AAI clade 1-4 medoid: GCF 900094905 1
    • AAI clade 1-5 medoid: GCF 008764295 1
      • AAI clade 1-5-1 medoid: GCF 000948285 1
      • AAI clade 1-5-2 medoid: GCA 000332645 1
      • AAI clade 1-5-3 medoid: GCF 000294775 2
        • AAI clade 1-5-3-1 medoid: GCF 000504165 1
        • AAI clade 1-5-3-2 medoid: GCA 018268255 1
        • AAI clade 1-5-3-3 medoid: GCF 008764295 1
        • AAI clade 1-5-3-4 medoid: GCF 003586445 1
        • AAI clade 1-5-3-5 medoid: GCF 004005475 1
        • AAI clade 1-5-3-6 medoid: GCF 000307855 1
        • AAI clade 1-5-3-7 medoid: GCF 001050115 1
        • AAI clade 1-5-3-8 medoid: GCF 001644195 2
        • AAI clade 1-5-3-9 medoid: GCF 001420715 1
        • AAI clade 1-5-3-10 medoid: GCF 001591585 1
        • AAI clade 1-5-3-11 medoid: GCF 000290615 1
        • AAI clade 1-5-3-12 medoid: GCF 902168435 1
        • AAI clade 1-5-3-13 medoid: GCF 002734285 1
        • AAI clade 1-5-3-14 medoid: GCF 000294775 2
          • AAI clade 1-5-3-14-1 medoid: GCF 000294775 2
            3 datasets: GCF 000294775 2 (AAI: 100.0%), GCF 004366035 1 (AAI: 96.83%), and GCF 017303275 1 (AAI: 96.35%)
          • AAI clade 1-5-3-14-2 medoid: GCF 000430765 1
          • AAI clade 1-5-3-14-3 medoid: GCF 000473245 1
          • AAI clade 1-5-3-14-4 medoid: GCF 000518885 1
          • AAI clade 1-5-3-14-5 medoid: GCF 001038755 1
          • AAI clade 1-5-3-14-6 medoid: GCF 001274725 1
          • AAI clade 1-5-3-14-7 medoid: GCF 001591465 1
          • AAI clade 1-5-3-14-8 medoid: GCF 001636345 1
          • AAI clade 1-5-3-14-9 medoid: GCF 002272225 1
          • AAI clade 1-5-3-14-10 medoid: GCF 002860125 1
          • AAI clade 1-5-3-14-11 medoid: GCF 002860165 1
          • AAI clade 1-5-3-14-12 medoid: GCF 007830235 1
          • AAI clade 1-5-3-14-13 medoid: GCF 006546985 1
          • AAI clade 1-5-3-14-14 medoid: GCF 008710145 1
          • AAI clade 1-5-3-14-15 medoid: GCF 009849585 1
          • AAI clade 1-5-3-14-16 medoid: GCF 011008855 1
          • AAI clade 1-5-3-14-17 medoid: GCF 018613035 1
          • AAI clade 1-5-3-14-18 medoid: GCF 900104575 1
          • AAI clade 1-5-3-14-19 medoid: GCF 900166665 1
        • AAI clade 1-5-3-15 medoid: GCF 014836955 1
        • AAI clade 1-5-3-16 medoid: GCF 001244735 1
        • AAI clade 1-5-3-17 medoid: GCF 001183965 1
        • AAI clade 1-5-3-18 medoid: GCF 008764245 1
        • AAI clade 1-5-3-19 medoid: GCF 900199725 1
        • AAI clade 1-5-3-20 medoid: GCF 018343625 1
        • AAI clade 1-5-3-21 medoid: GCF 001685015 1
        • AAI clade 1-5-3-22 medoid: GCF 002276165 1
        • AAI clade 1-5-3-23 medoid: GCF 014960805 1
      • AAI clade 1-5-4 medoid: GCF 016925635 1
      • AAI clade 1-5-5 medoid: GCF 014207425 1
      • AAI clade 1-5-6 medoid: GCF 002902565 1
      • AAI clade 1-5-7 medoid: GCF 001865995 1
      • AAI clade 1-5-8 medoid: GCF 001457555 1
      • AAI clade 1-5-9 medoid: GCF 000725285 1
      • AAI clade 1-5-10 medoid: GCF 002874535 1
      • AAI clade 1-5-11 medoid: GCA 002839095 1
      • AAI clade 1-5-12 medoid: GCF 014224155 1
      • AAI clade 1-5-13 medoid: GCA 018715825 1
      • AAI clade 1-5-14 medoid: GCF 002567005 1
      • AAI clade 1-5-15 medoid: GCA 002345505 1
      • AAI clade 1-5-16 medoid: GCF 012524115 1
      • AAI clade 1-5-17 medoid: GCF 002561455 1
      • AAI clade 1-5-18 medoid: GCA 900766305 1
      • AAI clade 1-5-19 medoid: GCF 018618415 1
      • AAI clade 1-5-20 medoid: GCF 007991335 1
      • AAI clade 1-5-21 medoid: GCF 000425545 1
      • AAI clade 1-5-22 medoid: GCA 017052515 1
      • AAI clade 1-5-23 medoid: GCF 018613325 1
      • AAI clade 1-5-24 medoid: GCF 000189395 1
      • AAI clade 1-5-25 medoid: GCF 003339585 1
      • AAI clade 1-5-26 medoid: GCF 013008635 1
    • AAI clade 1-6 medoid: GCA 900551895 1
    • AAI clade 1-7 medoid: GCF 009193305 1
    • AAI clade 1-8 medoid: GCA 017503135 1
    • AAI clade 1-9 medoid: GCA 900552565 1
    • AAI clade 1-10 medoid: GCA 017411305 1
    • AAI clade 1-11 medoid: GCF 001465345 1
    • AAI clade 1-12 medoid: GCA 900759455 1
    • AAI clade 1-13 medoid: GCF 015207245 1
    • AAI clade 1-14 medoid: GCA 017960805 1
    • AAI clade 1-15 medoid: GCA 001604115 1
    • AAI clade 1-16 medoid: GCA 900551775 1
    • AAI clade 1-17 medoid: GCA 016929555 1
    • AAI clade 1-18 medoid: GCF 004770145 1
    • AAI clade 1-19 medoid: GCF 004745505 1
    • AAI clade 1-20 medoid: GCA 900761225 1
    • AAI clade 1-21 medoid: GCA 900556695 1
    • AAI clade 1-22 medoid: GCA 017504995 1
    • AAI clade 1-23 medoid: GCA 900550055 1
    • AAI clade 1-24 medoid: GCA 017464135 1
    • AAI clade 1-25 medoid: GCA 014860805 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1