AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-24-1
medoid: GCA 900556885 1
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AAI clade 1-24-2
medoid: GCA 002413865 1
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AAI clade 1-24-2-1
medoid: GCA 002413865 1
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AAI clade 1-24-2-1-1
medoid: GCA 016176605 1
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AAI clade 1-24-2-1-2
medoid: GCA 002413865 1
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AAI clade 1-24-2-1-2-1
medoid: GCA 013815785 1
6 datasets: GCA 001790445 1 (AAI: 48.18%), GCA 007135955 1 (AAI: 49.12%), GCA 013694995 1 (AAI: 50.5%), GCA 013815785 1 (AAI: 100.0%), GCA 016178135 1 (AAI: 53.56%), and GCA 903946795 1 (AAI: 50.77%)
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AAI clade 1-24-2-1-2-2
medoid: GCA 002413835 1
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AAI clade 1-24-2-1-2-3
medoid: GCA 002792275 1
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AAI clade 1-24-2-1-2-4
medoid: GCA 013289705 1
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AAI clade 1-24-2-1-2-5
medoid: GCA 009923445 1
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AAI clade 1-24-2-1-2-6
medoid: GCA 007131065 1
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AAI clade 1-24-2-1-2-1
medoid: GCA 013815785 1
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AAI clade 1-24-2-1-3
medoid: GCA 009691555 1
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AAI clade 1-24-2-1-4
medoid: GCA 903859365 1
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AAI clade 1-24-2-1-1
medoid: GCA 016176605 1
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AAI clade 1-24-2-2
medoid: GCA 903839515 1
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AAI clade 1-24-2-1
medoid: GCA 002413865 1
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AAI clade 1-24-3
medoid: GCA 017511645 1
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AAI clade 1-24-1
medoid: GCA 900556885 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1