AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-19-1
medoid: GCF 000014445 1
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AAI clade 1-19-2
medoid: GCA 001436895 1
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AAI clade 1-19-3
medoid: GCF 014145615 1
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AAI clade 1-19-3-1
medoid: GCA 019117285 1
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AAI clade 1-19-3-2
medoid: GCF 014145615 1
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AAI clade 1-19-3-3
medoid: GCF 000160835 1
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AAI clade 1-19-3-4
medoid: GCF 005405145 1
5 datasets: GCF 000829395 1 (AAI: 75.94%), GCF 000876205 1 (AAI: 73.82%), GCF 001434475 1 (AAI: 64.81%), GCF 001436295 1 (AAI: 65.47%), and GCF 005405145 1 (AAI: 100.0%)
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AAI clade 1-19-3-5
medoid: GCF 012843675 1
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AAI clade 1-19-3-1
medoid: GCA 019117285 1
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AAI clade 1-19-4
medoid: GCA 910589175 1
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AAI clade 1-19-5
medoid: GCF 009864005 1
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AAI clade 1-19-6
medoid: GCF 000146325 1
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AAI clade 1-19-7
medoid: GCF 001434975 1
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AAI clade 1-19-8
medoid: GCF 000829055 1
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AAI clade 1-19-9
medoid: GCF 016861695 1
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AAI clade 1-19-10
medoid: GCF 000161935 1
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AAI clade 1-19-11
medoid: GCF 001435445 1
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AAI clade 1-19-12
medoid: GCF 001591685 1
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AAI clade 1-19-13
medoid: GCF 001436315 1
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AAI clade 1-19-14
medoid: GCF 018314255 1
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AAI clade 1-19-15
medoid: GCF 014838735 1
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AAI clade 1-19-16
medoid: GCF 004010835 2
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AAI clade 1-19-17
medoid: GCF 001437155 1
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AAI clade 1-19-18
medoid: GCF 003641185 1
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AAI clade 1-19-19
medoid: GCF 004101845 1
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AAI clade 1-19-20
medoid: GCF 003946625 1
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AAI clade 1-19-21
medoid: GCF 016861565 1
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AAI clade 1-19-22
medoid: GCF 001308195 1
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AAI clade 1-19-23
medoid: GCF 016861845 1
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AAI clade 1-19-24
medoid: GCF 003946645 1
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AAI clade 1-19-1
medoid: GCF 000014445 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1