AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-15-1
medoid: GCF 000166355 1
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AAI clade 1-15-2
medoid: GCA 013824375 1
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AAI clade 1-15-3
medoid: GCA 900550915 1
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AAI clade 1-15-4
medoid: GCA 002309375 1
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AAI clade 1-15-5
medoid: GCA 017502305 1
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AAI clade 1-15-6
medoid: GCA 012838915 1
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AAI clade 1-15-7
medoid: GCA 001896545 1
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AAI clade 1-15-8
medoid: GCA 017524445 1
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AAI clade 1-15-9
medoid: GCA 002385465 1
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AAI clade 1-15-10
medoid: GCA 001796495 1
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AAI clade 1-15-11
medoid: GCF 900343085 1
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AAI clade 1-15-12
medoid: GCF 002102475 1
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AAI clade 1-15-13
medoid: GCA 002427505 1
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AAI clade 1-15-14
medoid: GCA 017448975 1
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AAI clade 1-15-15
medoid: GCA 902765395 1
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AAI clade 1-15-16
medoid: GCA 018710985 1
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AAI clade 1-15-17
medoid: GCA 001604265 1
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AAI clade 1-15-17-1
medoid: GCA 001604265 1
8 datasets: GCA 001604265 1 (AAI: 100.0%), GCA 003454065 1 (AAI: 46.35%), GCA 017478205 1 (AAI: 73.77%), GCA 017694495 1 (AAI: 57.84%), GCA 017694915 1 (AAI: 55.07%), GCA 019113245 1 (AAI: 54.85%), GCA 900769955 1 (AAI: 60.44%), and GCF 009695635 1 (AAI: 60.84%)
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AAI clade 1-15-17-2
medoid: GCA 001604325 1
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AAI clade 1-15-17-3
medoid: GCA 003447785 1
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AAI clade 1-15-17-4
medoid: GCA 009784775 1
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AAI clade 1-15-17-5
medoid: GCA 003170115 1
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AAI clade 1-15-17-6
medoid: GCA 003247135 1
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AAI clade 1-15-17-7
medoid: GCA 013044245 1
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AAI clade 1-15-17-8
medoid: GCA 017540815 1
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AAI clade 1-15-17-1
medoid: GCA 001604265 1
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AAI clade 1-15-18
medoid: GCA 017464305 1
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AAI clade 1-15-19
medoid: GCA 004297395 1
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AAI clade 1-15-20
medoid: GCA 900546845 1
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AAI clade 1-15-21
medoid: GCA 002308795 1
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AAI clade 1-15-22
medoid: GCF 900142645 1
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AAI clade 1-15-23
medoid: GCA 017619735 1
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AAI clade 1-15-24
medoid: GCA 900542445 1
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AAI clade 1-15-25
medoid: GCA 018457305 1
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AAI clade 1-15-26
medoid: GCF 001678845 1
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AAI clade 1-15-27
medoid: GCF 001644665 1
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AAI clade 1-15-28
medoid: GCF 000745455 1
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AAI clade 1-15-29
medoid: GCA 003167155 1
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AAI clade 1-15-30
medoid: GCA 905214315 1
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AAI clade 1-15-31
medoid: GCA 902781945 1
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AAI clade 1-15-32
medoid: GCA 910588305 1
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AAI clade 1-15-33
medoid: GCA 017428385 1
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AAI clade 1-15-34
medoid: GCF 000472665 1
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AAI clade 1-15-35
medoid: GCA 900319345 1
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AAI clade 1-15-1
medoid: GCF 000166355 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1