AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-15-1
medoid: GCF 000166355 1
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AAI clade 1-15-2
medoid: GCA 013824375 1
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AAI clade 1-15-3
medoid: GCA 900550915 1
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AAI clade 1-15-4
medoid: GCA 002309375 1
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AAI clade 1-15-5
medoid: GCA 017502305 1
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AAI clade 1-15-6
medoid: GCA 012838915 1
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AAI clade 1-15-7
medoid: GCA 001896545 1
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AAI clade 1-15-8
medoid: GCA 017524445 1
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AAI clade 1-15-9
medoid: GCA 002385465 1
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AAI clade 1-15-10
medoid: GCA 001796495 1
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AAI clade 1-15-11
medoid: GCF 900343085 1
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AAI clade 1-15-12
medoid: GCF 002102475 1
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AAI clade 1-15-12-1
medoid: GCA 001509095 1
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AAI clade 1-15-12-2
medoid: GCA 001774995 1
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AAI clade 1-15-12-3
medoid: GCA 001789445 1
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AAI clade 1-15-12-4
medoid: GCA 001792345 1
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AAI clade 1-15-12-5
medoid: GCA 002069605 1
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AAI clade 1-15-12-6
medoid: GCF 900142105 1
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AAI clade 1-15-12-7
medoid: GCA 002399285 1
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AAI clade 1-15-12-8
medoid: GCA 002785065 1
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AAI clade 1-15-12-9
medoid: GCA 003644275 1
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AAI clade 1-15-12-10
medoid: GCA 012520995 1
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AAI clade 1-15-12-11
medoid: GCA 012523075 1
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AAI clade 1-15-12-12
medoid: GCA 012838235 1
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AAI clade 1-15-12-13
medoid: GCA 013390945 1
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AAI clade 1-15-12-14
medoid: GCA 016188545 1
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AAI clade 1-15-12-15
medoid: GCF 002102475 1
8 datasets: GCA 017357865 1 (AAI: 59.06%), GCF 000145615 1 (AAI: 76.19%), GCF 000189775 2 (AAI: 95.74%), GCF 000213255 1 (AAI: 47.67%), GCF 002102475 1 (AAI: 100.0%), GCF 009905255 1 (AAI: 94.31%), GCF 017874545 1 (AAI: 76.48%), and GCF 900205865 1 (AAI: 66.95%)
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AAI clade 1-15-12-16
medoid: GCA 017889745 1
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AAI clade 1-15-12-17
medoid: GCA 018266175 1
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AAI clade 1-15-12-18
medoid: GCF 000427425 1
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AAI clade 1-15-12-19
medoid: GCF 900169085 1
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AAI clade 1-15-12-1
medoid: GCA 001509095 1
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AAI clade 1-15-13
medoid: GCA 002427505 1
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AAI clade 1-15-14
medoid: GCA 017448975 1
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AAI clade 1-15-15
medoid: GCA 902765395 1
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AAI clade 1-15-16
medoid: GCA 018710985 1
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AAI clade 1-15-17
medoid: GCA 001604265 1
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AAI clade 1-15-18
medoid: GCA 017464305 1
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AAI clade 1-15-19
medoid: GCA 004297395 1
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AAI clade 1-15-20
medoid: GCA 900546845 1
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AAI clade 1-15-21
medoid: GCA 002308795 1
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AAI clade 1-15-22
medoid: GCF 900142645 1
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AAI clade 1-15-23
medoid: GCA 017619735 1
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AAI clade 1-15-24
medoid: GCA 900542445 1
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AAI clade 1-15-25
medoid: GCA 018457305 1
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AAI clade 1-15-26
medoid: GCF 001678845 1
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AAI clade 1-15-27
medoid: GCF 001644665 1
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AAI clade 1-15-28
medoid: GCF 000745455 1
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AAI clade 1-15-29
medoid: GCA 003167155 1
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AAI clade 1-15-30
medoid: GCA 905214315 1
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AAI clade 1-15-31
medoid: GCA 902781945 1
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AAI clade 1-15-32
medoid: GCA 910588305 1
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AAI clade 1-15-33
medoid: GCA 017428385 1
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AAI clade 1-15-34
medoid: GCF 000472665 1
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AAI clade 1-15-35
medoid: GCA 900319345 1
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AAI clade 1-15-1
medoid: GCF 000166355 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1